PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr024260.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 356aa    MW: 39447.2 Da    PI: 8.3633
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr024260.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.32.8e-08179226455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +    +k    a +L + ++Y++sLq
  Pbr024260.1 179 SHSLAERVRREKISERMKMLQKLVPGC----DKVTGRAVMLDEIINYVQSLQ 226
                  8*************************9....55599***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.24E-15173239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.35E-10173230No hitNo description
PROSITE profilePS5088815.04175225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-16176234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-5179226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-10181231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MAAFSYNGSL DSIFLPNAPA TNDIIIYSNF FSPSEPLTRE IQADNNSRAV ESSCTMDHSS  60
THKVAFSDNE NEPSVTKNKS TESSTVVDVD RLEIGEQVTQ KVTPLDKKRK SRIGSSFKSA  120
QSKGTQEHKG KKQKKIGGGT KKAEEKKIKS DKKDQVKVRE EPPTGYIHVR ARRGEATDSH  180
SLAERVRREK ISERMKMLQK LVPGCDKVTG RAVMLDEIIN YVQSLQNQVE FLSLKLASSN  240
PMFFDFGMDM GALVVKPERL CSMVSPYPSA QQCNLIQSTP FADTSTNITA TTAAATAAIT  300
TNNNYHFLDN SASHLLQRPN TFSQDSESLL WDVEDQRQNF HNPCGFSNSN LCSFN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr024260.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009334315.10.0PREDICTED: transcription factor bHLH137-like
RefseqXP_009334316.10.0PREDICTED: transcription factor bHLH137-like
TrEMBLA0A498I6N80.0A0A498I6N8_MALDO; Uncharacterized protein
STRINGXP_009334315.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41823358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.25e-53bHLH family protein