PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr023999.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 855aa    MW: 96850.8 Da    PI: 4.7053
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr023999.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.91.5e-12188210426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  e C+++++tG Ck+G++CkF+H+
  Pbr023999.1 188 EDCSYYLKTGSCKFGSNCKFNHP 210
                  89********************9 PP
2zf-CCCH30.18.1e-10235259327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  + +C++++r+G CkyG  C+++H++
  Pbr023999.1 235 QTECKYYLRSGGCKYGTDCRYSHSK 259
                  568********************95 PP
3zf-CCCH33.85.7e-11279304126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +++++C++++r+G Cky ++C+F+H+
  Pbr023999.1 279 PGERECPYYMRNGSCKYASNCRFNHP 304
                  5789*********************9 PP
4zf-CCCH25.91.7e-08415441127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++ C++f+rtG Ck+ ++Ck++H++
  Pbr023999.1 415 PGQPDCSYFLRTGDCKFKSNCKYHHPK 441
                  5789*********************96 PP
5zf-CCCH30.27.7e-10770792527
                  --SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                   C  +++tG Ck+G++CkF+H++
  Pbr023999.1 770 DCLLYLKTGSCKFGSNCKFNHPR 792
                  5888*****************96 PP
6zf-CCCH22.22.5e-07800823326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                   + C +++r+GtCk+ ++C F+H+
  Pbr023999.1 800 KKDCWHYMRNGTCKHENNCLFNHP 823
                  67899******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.88E-6183212IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.094184212IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-6184211IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-10188210IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-5190210IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.385232260IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5232259IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-7236259IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-5238259IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-5238268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.131278306IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5278305IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-8280304IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-5281305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4284303IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4414441IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.352414442IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-6416441IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-6764793IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.817765793IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-4765792IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7770792IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4771791IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.723797825IPR000571Zinc finger, CCCH-type
SMARTSM003560.022797824IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-4799823IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 855 aa     Download sequence    Send to blast
MELSEATSVV PPNPENPCTN HTHSDQGSLP SSPDPDPTPS DLDHAVLDEL QKLDLKEPVE  60
EGDGEPDELQ KLDSTEKVEE DGVGELQKVD LKEEEDGAGE LQKLDLKEEE GGEGVEEEDK  120
SSGEREVEIL NGEENERQSE QSCHSDGGEG WGGNQGWEED GGEVEEKKAE ETQESNRRYQ  180
YPVRPEAEDC SYYLKTGSCK FGSNCKFNHP VSRKTNQVPR ERVKDKDELA ENPSQTECKY  240
YLRSGGCKYG TDCRYSHSKL KPSVAPVLEL NFLGLPIRPG ERECPYYMRN GSCKYASNCR  300
FNHPDPTAIG GSDPPSGFGK DGPVLLQIAS QSTVAPWSAP RPLNEAPIYT PMMIPPPQGI  360
SSQNSEWNGY PAPAYVPERS MPARPLYMMN NSVTETNVYK HYPHQNQVEE FPERPGQPDC  420
SYFLRTGDCK FKSNCKYHHP KTQTAVAPLF TELSDKGLPL RPMKVSEDKA MQGEELAEKQ  480
DQTESKEMFV GDFVLKVSKD KAKPREELAE KQDQTESKEV SKDKAKQREE LVEKQVQTES  540
KKKVSKDKAK QREELSVKQD QTESKKVSKE KAKQREEFAE KQDQTEIKVS KDKAKQTEEL  600
AEKQDQTESK KKLSKDKAKQ KEELAERQDQ TESKVCNCID DQSDHPLFSQ SPLPSDLNPE  660
ILEWIQGPDP TELDRTYAIF DKFQQFDPAF ENWNFNPAIV DEIWELSLKE WEKKEEEEKE  720
RESEKENEME REGKSSGIRG GNQNGGDVEN EVVAESSRRN QYPLRPKAGD CLLYLKTGSC  780
KFGSNCKFNH PRGRKNKQGK KDCWHYMRNG TCKHENNCLF NHPDPTPAEE SHPQSAYESH  840
GIHSETTEFI TPVL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr023999.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009333889.10.0PREDICTED: zinc finger CCCH domain-containing protein 67-like
TrEMBLA0A498JJL40.0A0A498JJL4_MALDO; Uncharacterized protein
STRINGXP_009333889.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.11e-105C3H family protein