PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr023992.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 849aa    MW: 93693.3 Da    PI: 5.764
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr023992.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.38.9e-1632122199
                  EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  ffk++       s+ l lp kfa +   ++   +k+ +led++gr+W+v++  ++ +g+  +++GW+ F+  n+L++g+f++F ++ +s f   vk++
  Pbr023992.1  32 FFKIM--IGDQLSKVLFLPPKFAPTVsALV---NKKAVLEDSRGRQWKVTI--SRVDGSLAFQQGWNAFALYNDLQVGEFLIFNYVTDSHF--DVKIY 120
                  56666..3334445699******9996555...458***************..*********************************99999..99999 PP

                  -S CS
           B3  98 rk 99 
                  +k
  Pbr023992.1 121 DK 122
                  87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-2129125IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-2130125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.11230123IPR003340B3 DNA binding domain
CDDcd100173.82E-1631121No hitNo description
SMARTSM010193.1E-932123IPR003340B3 DNA binding domain
PfamPF023622.8E-1332122IPR003340B3 DNA binding domain
PROSITE profilePS508639.361749848IPR003340B3 DNA binding domain
SMARTSM010190.13751844IPR003340B3 DNA binding domain
CDDcd100175.16E-9758847No hitNo description
SuperFamilySSF1019361.22E-9762847IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-8773847IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    Send to blast
MGSKLEACAE CTLNCLQDHG NKKKASTVVA SFFKIMIGDQ LSKVLFLPPK FAPTVSALVN  60
KKAVLEDSRG RQWKVTISRV DGSLAFQQGW NAFALYNDLQ VGEFLIFNYV TDSHFDVKIY  120
DKSGCEKLKF PEAMNQKKWT WDNQNSSVKD GPCHTVDNSL MDKQDSSTSL MSDADEDIGQ  180
DLDPMNAKRK APMVMGNASK CDNSHDRSKL KLKEPDRDIG QHLYDMNSKR KAPMVMGNAS  240
NRDNSHERSK LKRKKPDGDV GQDLYGMNAK TKAPVVTGNA SNCDNSHERS KLKLKEPDGD  300
IGQHVCGMNA KRKAPVVTGN ALCDNSHERS KYKLKEPDGD ISQDLYGMNA KTKAPVVTKN  360
ASNCDNSHKG SKLKLKESDG DIDQHLYDMN DKGECTIATE NASNYDDSNE MPKLKPKEEY  420
IEDMICMIDR ELGDKQEDNR SCIYDSLNFE LFELKSGTGG SNEVVVWDET CSHHDDSSVR  480
LRNEAGSVDK NPVAKEAVAA AFPMDETYSP HDDSSLRLRN EAGSVDKSPV AKEAVTAAIP  540
MDETCSCHDD SSLRLTGEAS LVDKAPVARE AVTIAIPFDA YKFDGTEKNN SSEAIVKKVS  600
PSGDDSRTTN KTSHHLFPTA AVNPNDTGSV SVNNIIELLN DGGSGNKVAA SKKEHDLIDD  660
SFQRAKENFT GTPLESFDMM MKAVKKESVD LTSDPCFQKI IPEIDGKSFE PVDAVCSQIS  720
NMIKREKDIA FPMPVVKSEP VDQVETFPSS SFSCLVAVGS QSFLELPVRL PIRMTIRGRH  780
TPDRRVIFLR DTTMRLWPVL YIDNCFSKIL SGGWEAFSKA NNIQPGDTCA IGIEDASERI  840
CSVHIIRT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr023992.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009333820.10.0PREDICTED: uncharacterized protein LOC103926731 isoform X1
TrEMBLA0A498JRA60.0A0A498JRA6_MALDO; Uncharacterized protein
STRINGXP_009333820.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF124762828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.16e-13B3 family protein