PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr023737.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 355aa    MW: 40209.1 Da    PI: 5.3107
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr023737.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.1e-0690113226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  k  lC f+ + G+C  G +CkF+H+
  Pbr023737.1  90 KSILCEFYKA-GQCAKGFKCKFSHD 113
                  6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.66E-688113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.06588115IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-488114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-490114IPR000571Zinc finger, CCCH-type
SMARTSM0035659150191IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.681178192IPR000571Zinc finger, CCCH-type
PfamPF165435.5E-17211291IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MPPKQQSKAD LAKKQKIVED KTFELKNKNK SKNVQKYVQT LKQSVQTKPD PSKTAAKKNK  60
EEEKAKDKEL NDLFKVAISQ PKVPVGVDPK SILCEFYKAG QCAKGFKCKF SHDLNVQRKG  120
EKIDIYSDKR YNEETMEDWD QETLEKMVES KKNEYQQNKP TDIVKAVEKK QYSWFWVCPN  180
GGKNCHYRHA LPPGYVLKSQ MKALLEEESE KIPIEEEIEN QRVKLTTSTP MTPELFMQWK  240
KKNIAERDAS LAAKMAERAK NDHMSGREQF LSDSSLFVDD AEADEKYHKE EEPAVAEKKA  300
NENSNGDGPS NSATAGGDAE VTNVDDDDEL DIDELNELEA SLSNVAIQEP GTHA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr023737.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009333605.10.0PREDICTED: zinc finger CCCH domain-containing protein 11-like
SwissprotQ0JHZ21e-164C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A498K1650.0A0A498K165_MALDO; Uncharacterized protein
STRINGXP_009333607.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44191113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-145C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]