PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr023720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | CPP | ||||||||
Protein Properties | Length: 229aa MW: 25678.8 Da PI: 6.0852 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 39.1 | 1.5e-12 | 89 | 128 | 2 | 41 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnC++skClk+Y eCf+ag++C ++ C++C Nk e Pbr023720.1 89 ACKRCNCRRSKCLKLYFECFSAGVYCLDSYACQNCYNKPE 128 589**********************************975 PP | |||||||
2 | TCR | 23.5 | 1.2e-07 | 177 | 195 | 2 | 20 |
TCR 2 ekkgCnCkkskClkkYCeC 20 +k+gCnCkkskCl kYCe Pbr023720.1 177 HKRGCNCKKSKCLEKYCER 195 799**************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 5.9E-9 | 88 | 129 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 19.795 | 89 | 222 | IPR005172 | CRC domain |
Pfam | PF03638 | 1.5E-8 | 91 | 126 | IPR005172 | CRC domain |
SMART | SM01114 | 0.079 | 176 | 205 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 3.9E-4 | 178 | 194 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MSETAINPRD GKAEEELLRF TFEKVKEPCT NTDLVSGAQN CGKTAAKPLC GSRHLMLVDL 60 EADPCDAGMS PSQDTDSINK NKEPYTSEAC KRCNCRRSKC LKLYFECFSA GVYCLDSYAC 120 QNCYNKPEFE HTVSEIHHHI ESRNPLAFTS KVVDNAIDSS ANSTEDQNLT TPSSAGHKRG 180 CNCKKSKCLE KYCERHQVYM YIFTLHFSVS PASETWCFSE FIELDLDK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269|PubMed:10769244, ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:9043081, ECO:0000269|PubMed:9725857}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr023720.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020414497.1 | 2e-62 | protein tesmin/TSO1-like CXC 3 isoform X6 | ||||
Refseq | XP_020414498.1 | 1e-62 | protein tesmin/TSO1-like CXC 3 isoform X7 | ||||
Refseq | XP_020414499.1 | 9e-63 | protein tesmin/TSO1-like CXC 3 isoform X8 | ||||
Swissprot | Q9LUI3 | 1e-35 | TSO1_ARATH; CRC domain-containing protein TSO1 | ||||
TrEMBL | A0A251PXA5 | 3e-62 | A0A251PXA5_PRUPE; Uncharacterized protein | ||||
STRING | XP_008228663.1 | 4e-64 | (Prunus mume) | ||||
STRING | EMJ17894 | 7e-61 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14277 | 14 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 5e-38 | Tesmin/TSO1-like CXC domain-containing protein |
Publications ? help Back to Top | |||
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