PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr023429.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 461aa    MW: 50921.1 Da    PI: 6.9914
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr023429.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.8e-09285331455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h e+Er RR + N  f  Lr+++P+       K++ ++ L  Av YI++L+
  Pbr023429.1 285 SHVEAERLRRVKFNRLFCVLRSVVPNV-----SKMDRSSLLADAVAYINQLK 331
                  799***********************6.....5*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.5E-3423181IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.36E-14272342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.67E-11279335No hitNo description
PROSITE profilePS5088814.03281330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-7285330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-12285342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-9287336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MEAILSSFSS PNFRDNPSSS TFKQRLQFIV ESNNAAECWV YAIFWEATGD NNLSWGGGHY  60
KSSNINSYQP KLGFSDVDFV GNNDDGDVTD SEWFYFYSVS LTQSFTADNN ILGRAFCSGG  120
FVWLAGDHEF QLYECERVKE ARMHGIQTLV CIATLRGVLE LASLDVIKQD WGLVHLTKSL  180
FRSNDNDDDH NRLPNQQASR EASGLVPPLK NGRFLGAQEE LTTQEGGGNE ATPINIGGSS  240
ISPPDSRSNS VGNFTSKNIE NTQSKKRGRP SSNHGAATRE SQLLSHVEAE RLRRVKFNRL  300
FCVLRSVVPN VSKMDRSSLL ADAVAYINQL KAKVEELETK IQAQLPPPQK SKVDHNNNVI  360
NIINLEKNSS YDSNRVGGCG VEVDVKIIGS SEAIIRVLCP NQDYPYARLM NVLKGLGLQV  420
SHASISSINE LMIQNVVTRL PYGFTSGKAL RLGIIKGWYI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-26111842195Transcription factor MYC3
4rqw_B2e-26111842195Transcription factor MYC3
4rs9_A2e-26111842195Transcription factor MYC3
4yz6_A2e-26111842195Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr023429.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009354516.10.0PREDICTED: transcription factor MYC3-like
TrEMBLA0A498IP060.0A0A498IP06_MALDO; Uncharacterized protein
STRINGXP_009354516.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.14e-46bHLH family protein