PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr023346.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | LBD | ||||||||
Protein Properties | Length: 228aa MW: 24643.9 Da PI: 8.0079 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.9 | 2e-39 | 18 | 118 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkC k+C++apyf aeq +++fa+vhk+FGasn +kll ++p+++r da+ +l+yeA ar+rdPvyG++++i++lqqq+ +l+aela++ Pbr023346.1 18 PCGACKFLRRKCIKGCIFAPYFDAEQgTAHFAAVHKVFGASNASKLLLRIPPHKRLDAVVTLCYEALARVRDPVYGCASHIFTLQQQVVNLQAELAYV 115 7***********************9989*********************************************************************9 PP DUF260 98 kee 100 +++ Pbr023346.1 116 QAR 118 976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.291 | 17 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-37 | 18 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MSGSSSNGNN DNGGGGGPCG ACKFLRRKCI KGCIFAPYFD AEQGTAHFAA VHKVFGASNA 60 SKLLLRIPPH KRLDAVVTLC YEALARVRDP VYGCASHIFT LQQQVVNLQA ELAYVQARLG 120 TLQRFPLPPQ PPQLEIPPPT RSLQYSSSNI NVTSSSSSDM VPTPNILTHC DPLQAPNTSS 180 EMSSLFNTED QELIDGENLQ ALAREFVCRY LPGVRLNKSS GSHHQNF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-38 | 14 | 112 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-38 | 14 | 112 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr023346.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009379264.1 | 1e-169 | PREDICTED: LOB domain-containing protein 19 | ||||
Swissprot | O81322 | 1e-68 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | A0A498KKD9 | 1e-147 | A0A498KKD9_MALDO; Uncharacterized protein | ||||
STRING | XP_009379264.1 | 1e-168 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1771 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45410.1 | 5e-61 | LOB domain-containing protein 19 |