PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr023339.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 324aa    MW: 35949.9 Da    PI: 7.9882
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr023339.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.5e-104895152
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS
          HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52
                 r++ +  rE+ RRdr+N+ f+eL   l ++     +K++Ka+iL+ +++ +k
  Pbr023339.1 48 RKVQKADREKLRRDRLNEHFFELGNTLDPD----RPKNDKATILTDTIQMLK 95
                 5677889********************997....79************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.5324797IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-74895IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-1148120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.37E-74896No hitNo description
SuperFamilySSF474591.96E-1148113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.7E-653103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDHWKSDDFS AASVPSSTQR LPSSRPHNSN TDSRQRLDVE TKDPIVARKV QKADREKLRR  60
DRLNEHFFEL GNTLDPDRPK NDKATILTDT IQMLKDFAAD VNKLKAECSA LTDESRELTQ  120
EKNELREEKA SLKSDIENLN VQYQQRLRVM FPWAGMDPAV VMAPPYSYPM RVAVPPGPIP  180
MHPSLQSYPY FQAQNPAAMP NPCSTFVPYP APANPPVQQP SPQYASVSHL SSKQDSRSRS  240
SDHQRGSTAE RCDDSNDVAT DLELKMPGSS TPQDSSSAVK KAKQSQRKDR SVTDGCSSSR  300
HSISQVVQDS SSNSVGDVPK PNK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr023339.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009379403.10.0PREDICTED: transcription factor bHLH121-like
SwissprotQ9LT232e-87BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A498KGZ80.0A0A498KGZ8_MALDO; Uncharacterized protein
STRINGXP_009379403.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.14e-85bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]