PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr023206.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 434aa    MW: 47280.2 Da    PI: 6.737
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr023206.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.7e-12368413655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR ri +++ +L+el+P+     +k  + +++L +AveYIk+Lq
  Pbr023206.1 368 SIAERVRRTRISERMRKLQELVPNM----DKQTNTSDMLDLAVEYIKDLQ 413
                  689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.799362412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-16365425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.45E-13366417No hitNo description
Gene3DG3DSA:4.10.280.101.1E-14367424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-9368413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-13368418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MESDLQQHHK PQQHMNSGLM RYRSAPSSYF TNILDSELYE PFFNRPSSPE TERILSRFLA  60
SEGGGNGGGG GGGGEGTEQI ASQHKVATQV NNQQPQFLVP KVDDEMEVIQ QHQQQQQQQQ  120
QQQQQQSNLN NYSSVAQGFY QSPAAKPPLP NQNLTSANEG AYSMRGSHLP PMKTGGGVAN  180
SNLIRHSSSP AGWFSNVNID GCAALRGMGN FGARDSTNEE ASFSPASRLK NFSSVPPSTS  240
GLISPISEIG NKRMRSNGQD AGAFGDGRGN NYVTGFPMDS WDDSAILGDD ISGSTGFRDD  300
DVKAYTGLSP SETQDVEAGS CPPTLLAHHL SLPKTATEMA AIEKFLQLQD SVPCKIRAKR  360
GCATHPRSIA ERVRRTRISE RMRKLQELVP NMDKQTNTSD MLDLAVEYIK DLQTQVQTLS  420
EHRAKCTCSN KQQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr023206.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009379430.10.0PREDICTED: transcription factor bHLH130-like isoform X2
TrEMBLA0A498IPJ80.0A0A498IPJ8_MALDO; Uncharacterized protein
STRINGXP_009379429.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41853455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.15e-68bHLH family protein