PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr022696.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

GRAS

Protein Properties

Length: 628aa MW: 70984.6 Da PI: 5.7102

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr022696.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	273.4	7.1e-84	262	625	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshlta 98 + Ll++Ae v +++e+a++lL r + as + +p+qR+++yf+eAL++r+ + +++++yk + s+ s n ++ + +f++ +P++ + + Pbr022696.1 262 AHILLAAAEKVGYQQFERANRLLLRCEFAASFKVNPVQRVVFYFAEALRKRIEKeTGNGMYKGNEISTYS--NGLSTNLTFLAFYQDTPFHSVMQHPG 357 699*************************************************89999999999987..34444445568************* PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 q Ile v+ e+ vH iD++i G+QW L++ La R+ l iT+vg + k+++eetg+rLa++A++l++pf+f+++++ ++ed++ + ++ Pbr022696.1 358 IQVILENVALESNVHLIDLEIRSGVQWTGLMEVLAGREeCHIELLTITAVGV---TGKQKIEETGRRLASVAKALNLPFQFKAVIVADMEDVKDQLFD 452 *********************************94445699***...68************************************* PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 v+ Ea++V l l ++ +++ +le+ +++++++lsP v+vv+e ea+hns+sF++rf++al yysalfd+lea + +++++r+ +E l++ Pbr022696.1 453 VEDYEAVVVYAPLILRTMISRPSCLEN----LMRVMRNLSPCVMVVIEVEANHNSPSFVNRFIDALFYYSALFDCLEACM-KQEKDRVLMEGL-LHEG 544 ***************88888888....*******************************************96.666777777765. PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 i+n+v eg+er+ r t+e Wr+ + ++ + +++ls+ a qa+l+ +k++s +++ + ++l+ gWk+ p+ s+SaW+ Pbr022696.1 545 IRNIVVVEGSERVVRSVTMEVWRAFFARFRMVEINLSNAALYQASLVAKKFGSPPCTLDWKGKCLIVGWKGTPIHSLSAWK 625 ************************************************999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	38.919	235	605	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.5E-81	262	625	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 628 aa Download sequence Send to blast
MANSFFSFTP FDFGVLGGGG GLTPQLEDYD KEDQELKGKP DHLFGIEELG LGEMEKLSHL 60 SKDQQQSKAS YLMLDNFSFH TGCSEHDLQR PSFKSEKARA HVSKDHDHRH YQQQNQHYQQ 120 PSKSNYSDWD NFTFDSAFPS TQPIQDATNE LTYSQIGESD IAETNKQMPH QSSLAVLELL 180 NNYGSAFKNL RGDRLSNRCN EAEASLFSIQ QKLSTEEIMR VAGARYVQFS NQGYGDFFMP 240 LHPFGYALSG LSEEETKDVE LAHILLAAAE KVGYQQFERA NRLLLRCEFA ASFKVNPVQR 300 VVFYFAEALR KRIEKETGNG MYKGNEISTY SNGLSTNLTF LAFYQDTPFH SVMQHPGIQV 360 ILENVALESN VHLIDLEIRS GVQWTGLMEV LAGREECHIE LLTITAVGVT GKQKIEETGR 420 RLASVAKALN LPFQFKAVIV ADMEDVKDQL FDVEDYEAVV VYAPLILRTM ISRPSCLENL 480 MRVMRNLSPC VMVVIEVEAN HNSPSFVNRF IDALFYYSAL FDCLEACMKQ EKDRVLMEGL 540 LHEGIRNIVV VEGSERVVRS VTMEVWRAFF ARFRMVEINL SNAALYQASL VAKKFGSPPC 600 TLDWKGKCLI VGWKGTPIHS LSAWKFT*

Sequence ? help Back to Top

Protein Sequence Length: 628 aa Download sequence Send to blast

MANSFFSFTP FDFGVLGGGG GLTPQLEDYD KEDQELKGKP DHLFGIEELG LGEMEKLSHL  60
SKDQQQSKAS YLMLDNFSFH TGCSEHDLQR PSFKSEKARA HVSKDHDHRH YQQQNQHYQQ  120
PSKSNYSDWD NFTFDSAFPS TQPIQDATNE LTYSQIGESD IAETNKQMPH QSSLAVLELL  180
NNYGSAFKNL RGDRLSNRCN EAEASLFSIQ QKLSTEEIMR VAGARYVQFS NQGYGDFFMP  240
LHPFGYALSG LSEEETKDVE LAHILLAAAE KVGYQQFERA NRLLLRCEFA ASFKVNPVQR  300
VVFYFAEALR KRIEKETGNG MYKGNEISTY SNGLSTNLTF LAFYQDTPFH SVMQHPGIQV  360
ILENVALESN VHLIDLEIRS GVQWTGLMEV LAGREECHIE LLTITAVGVT GKQKIEETGR  420
RLASVAKALN LPFQFKAVIV ADMEDVKDQL FDVEDYEAVV VYAPLILRTM ISRPSCLENL  480
MRVMRNLSPC VMVVIEVEAN HNSPSFVNRF IDALFYYSAL FDCLEACMKQ EKDRVLMEGL  540
LHEGIRNIVV VEGSERVVRS VTMEVWRAFF ARFRMVEINL SNAALYQASL VAKKFGSPPC  600
TLDWKGKCLI VGWKGTPIHS LSAWKFT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-36	269	624	27	378	Protein SCARECROW
5b3h_A	1e-36	269	624	26	377	Protein SCARECROW
5b3h_D	1e-36	269	624	26	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr022696.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009378753.1	0.0	PREDICTED: DELLA protein RGL1-like
TrEMBL	A0A498IMH3	0.0	A0A498IMH3_MALDO; Histone-lysine N-methyltransferase
STRING	XP_009378753.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF479	33	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	1e-48	RGA-like 1