PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr022283.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 586aa    MW: 63323.9 Da    PI: 8.2093
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr022283.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.22.8e-15279366186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W++  + +Liea  e+  +l+rg+lk+++W+ev++++      +++ ++ +qCk++++ ++k+yk +k   + +  +  s++p++++l+
  Pbr022283.1 279 CWSEGATAVLIEAWGERYLELSRGNLKQKHWKEVAEVVssreNYGKIPKTDIQCKNRIDTVKKKYKLEKSKIGAG--GGPSKWPFYERLD 366
                  7*************************************8766667789999******************999997..67779******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.10.20.302.2E-3862163IPR012675Beta-grasp domain
PROSITE profilePS5108510.5463166IPR0010412Fe-2S ferredoxin-type iron-sulfur binding domain
SuperFamilySSF542921.08E-2664163IPR0010412Fe-2S ferredoxin-type iron-sulfur binding domain
CDDcd002074.69E-1465155IPR0010412Fe-2S ferredoxin-type iron-sulfur binding domain
PfamPF001115.8E-1274151IPR0010412Fe-2S ferredoxin-type iron-sulfur binding domain
PRINTSPR003552.6E-10100110IPR001055Adrenodoxin
PROSITE patternPS008140100110IPR018298Adrenodoxin, iron-sulphur binding site
PRINTSPR003552.6E-10120134IPR001055Adrenodoxin
PRINTSPR003552.6E-10143151IPR001055Adrenodoxin
PfamPF138373.0E-26277368No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009055Molecular Functionelectron carrier activity
GO:0051537Molecular Function2 iron, 2 sulfur cluster binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MLVSRLSAVR TQMIKHLVKA PLTSAPKTGN FSGHYGYIFH NPKHQTYSST TAHEEGDKKV  60
EEISVTFVDK DEMEKHIKIP VGMSILEAAH ENDIELEGAC EGSCACSTCH VIVRDMEYYN  120
KLEDPTDEEN DMLDLAFGLT ETSRLGCQMV AKPELDGICL ELPSATRNFA VDSASSQIGD  180
SLRTGAVYYR ILDLDRTDPD PRTIAVVSME EDDEIQSPAS GGSRSPASTR PNGRITVTVA  240
VPPAQGQAPT PTQNKILTLA LPSSAQQQGR SSGGGREDCW SEGATAVLIE AWGERYLELS  300
RGNLKQKHWK EVAEVVSSRE NYGKIPKTDI QCKNRIDTVK KKYKLEKSKI GAGGGPSKWP  360
FYERLDHLIG PSGAKVGPGS AGGGGSGGFS GHSKKMPVGL RHSQFLGGRA KREGKIRQRD  420
LVESDSDESR EPSPISIDNE IFERKRRTAN ANANANANVN VNANASVRKG VGGGLRPCAV  480
GREKGGGGGG GCGSSVSELT RAILKFGEAY EHAESAKLQQ VVEMEKQRMK FAKELELQRL  540
QFFMKTQVEI SQLKSGSGRK SRVNGVGNAS NHRSSNNNNN SDCSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2mjd_A1e-33611682108Adrenodoxin homolog, mitochondrial
2mje_A1e-33611682108Adrenodoxin homolog, mitochondrial
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr022283.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6902181e-161KP690218.1 Prunus persica var. persica Electron transfer protein 22 (ADX2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009378369.10.0PREDICTED: trihelix transcription factor ASIL2-like isoform X1
TrEMBLA0A498HDV00.0A0A498HDV0_MALDO; Uncharacterized protein
STRINGXP_009378369.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79193044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-48sequence-specific DNA binding transcription factors