PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr021937.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 881aa    MW: 98445.1 Da    PI: 8.9313
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr021937.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.4e-06174193525
                  --SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                  lC++++  G C++ + C+F H
  Pbr021937.1 174 LCKDYMT-GRCRRASDCQFLH 193
                  9******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.394169196IPR000571Zinc finger, CCCH-type
SMARTSM003560.0018169195IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-5173193IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.235230257IPR000571Zinc finger, CCCH-type
SMARTSM003560.0056231256IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.671294321IPR000571Zinc finger, CCCH-type
SMARTSM003560.085294320IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 881 aa     Download sequence    Send to blast
MNRTSRKRSS KWDLVEEPQF EDVNMQDNSW MGKAGRPFRP KESGRDWPSP ETNDLQRPKH  60
DLNLPSREPL PGSRGSHKHE STNKRCNRYM DDSMVWDGDE NCSTRMSPGF DDWREHRSQS  120
PKSGWKRSLR GRSRSRSRSR SKSQSWSRSP DRGYRRESLF LDRNRGRPGI SAQLCKDYMT  180
GRCRRASDCQ FLHEGNSKYD DSWETRHRKR GALRYASPPE TTEYYPLKSE RYSVYCSDFV  240
KGKCRKGASC KFDHHRPSDG FSKGSTIENT RERENERRNR DTSTERGAER VPHRSGDIPC  300
KFFAAGNCRN KKYCRFSHHI QAYVSPERKS KDVRWGPGHS LNDAGPAWNG PKWSDTVTLS  360
DAPMLTVDNR NIGVPEVRSS AWSVDDNRWG CDRNDENKNC VDRNVNHEAA ERNEKDANLW  420
KEDNVGACVD LPKSRDTEKW LGDMSPDWNY TVQSSNHVGK QEHGRITQGS EPSTLVHGAA  480
SIIEPEIAER SDFLQNKDLR GDGVISLPYD NRSAIEEPSS FRNNLSVTAN IVGCQSFDNS  540
GQSSSAFPFS GLSTIGQSQT LIPGRGIVKS PHDTLSPEGK SVNKLDIGDA KTSLVDGIPQ  600
VPSLVGGKEL KQLTNLSASL AQLLGNRQQL PQIYAALNSH NAVSTPTLLP KSEGSSEQLL  660
GATFQPDPAM LSHKPYDPIC DSIEHRINNN QMCLLPNSAG NTSVDGNVEK LSNVVSPSSL  720
PSGANTNNYH QTNNPVQEPT HKNHQLSQLE RGAKPEVVKG NGELGAEEIK SDQEENNSPV  780
NGPMEVTEKD GADGGKKLKE VKGSRAFKFA LVENVKELLK PSWKEGQVSK DAYKTIVKKV  840
VDKVTSTMQG ANIPQTQEKI DHYLSFSKPK LTKLVQVSAV *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129141RGRSRSRSRSRSK
2131139RSRSRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr021937.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009354057.10.0PREDICTED: zinc finger CCCH domain-containing protein 38-like
RefseqXP_009354058.10.0PREDICTED: zinc finger CCCH domain-containing protein 38-like
TrEMBLA0A498I2T30.0A0A498I2T3_MALDO; Uncharacterized protein
STRINGXP_009354057.10.0(Pyrus x bretschneideri)
STRINGXP_009354058.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40993252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.15e-09C3H family protein