PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr021936.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | C3H | ||||||||
Protein Properties | Length: 881aa MW: 98445.1 Da PI: 8.9313 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.8 | 1.4e-06 | 174 | 193 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 lC++++ G C++ + C+F H Pbr021936.1 174 LCKDYMT-GRCRRASDCQFLH 193 9******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.394 | 169 | 196 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0018 | 169 | 195 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-5 | 173 | 193 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.235 | 230 | 257 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0056 | 231 | 256 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.671 | 294 | 321 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.085 | 294 | 320 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 881 aa Download sequence Send to blast |
MNRTSRKRSS KWDLVEEPQF EDVNMQDNSW MGKAGRPFRP KESGRDWPSP ETNDLQRPKH 60 DLNLPSREPL PGSRGSHKHE STNKRCNRYM DDSMVWDGDE NCSTRMSPGF DDWREHRSQS 120 PKSGWKRSLR GRSRSRSRSR SKSQSWSRSP DRGYRRESLF LDRNRGRPGI SAQLCKDYMT 180 GRCRRASDCQ FLHEGNSKYD DSWETRHRKR GALRYASPPE TTEYYPLKSE RYSVYCSDFV 240 KGKCRKGASC KFDHHRPSDG FSKGSTIENT RERENERRNR DTSTERGAER VPHRSGDIPC 300 KFFAAGNCRN KKYCRFSHHI QAYVSPERKS KDVRWGPGHS LNDAGPAWNG PKWSDTVTLS 360 DAPMLTVDNR NIGVPEVRSS AWSVDDNRWG CDRNDENKNC VDRNVNHEAA ERNEKDANLW 420 KEDNVGACVD LPKSRDTEKW LGDMSPDWNY TVQSSNHVGK QEHGRITQGS EPSTLVHGAA 480 SIIEPEIAER SDFLQNKDLR GDGVISLPYD NRSAIEEPSS FRNNLSVTAN IVGCQSFDNS 540 GQSSSAFPFS GLSTIGQSQT LIPGRGIVKS PHDTLSPEGK SVNKLDIGDA KTSLVDGIPQ 600 VPSLVGGKEL KQLTNLSASL AQLLGNRQQL PQIYAALNSH NAVSTPTLLP KSEGSSEQLL 660 GATFQPDPAM LSHKPYDPIC DSIEHRINNN QMCLLPNSAG NTSVDGNVEK LSNVVSPSSL 720 PSGANTNNYH QTNNPVQEPT HKNHQLSQLE RGAKPEVVKG NGELGAEEIK SDQEENNSPV 780 NGPMEVTEKD GADGGKKLKE VKGSRAFKFA LVENVKELLK PSWKEGQVSK DAYKTIVKKV 840 VDKVTSTMQG ANIPQTQEKI DHYLSFSKPK LTKLVQVSAV * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 129 | 141 | RGRSRSRSRSRSK |
2 | 131 | 139 | RSRSRSRSR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr021936.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009354057.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 38-like | ||||
Refseq | XP_009354058.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 38-like | ||||
TrEMBL | A0A498I2T3 | 0.0 | A0A498I2T3_MALDO; Uncharacterized protein | ||||
STRING | XP_009354057.1 | 0.0 | (Pyrus x bretschneideri) | ||||
STRING | XP_009354058.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4099 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 5e-09 | C3H family protein |