PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr021929.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

G2-like

Protein Properties

Length: 221aa MW: 24865.9 Da PI: 7.7309

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr021929.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.5	3e-33	28	82	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtp+LH+rFv+ v++LGG++kAtPk++l++m++kgLtl+hvkSHLQkYRl Pbr021929.1 28 KPRLRWTPDLHDRFVDTVTKLGGPDKATPKSVLRVMGLKGLTLYHVKSHLQKYRL 82 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.8E-32	25	82	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.694	25	85	IPR017930	Myb domain
TIGRFAMs	TIGR01557	6.6E-25	28	83	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.63E-16	28	84	IPR009057	Homeodomain-like
Pfam	PF00249	2.0E-8	30	81	IPR001005	SANT/Myb domain
Pfam	PF14379	2.6E-19	131	176	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MERNIYVTSE GEGNCGYENG VMMTRDPKPR LRWTPDLHDR FVDTVTKLGG PDKATPKSVL 60 RVMGLKGLTL YHVKSHLQKY RLGQHARKHN SVEEQSRENN GDSYVHFSNL HSTSSGIKSS 120 GGGKTEQGTI PLSEALKCQI EEQNSLQEQL EVQKKLQMRI EAQEKYLQAI LEKAQKGLTL 180 DVNGSHNIEA TRAQLTDFNL ALSNFMENIA NKIEEETQQR *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-21	28	85	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-21	28	85	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-21	28	85	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-21	28	85	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-21	28	85	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-21	28	85	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-21	28	85	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-21	28	85	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-21	28	85	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-21	28	85	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-21	28	85	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-21	28	85	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr021929.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009347087.1	1e-130	PREDICTED: myb family transcription factor PHL11
Swissprot	C0SVS4	5e-74	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A498HNU9	1e-127	A0A498HNU9_MALDO; Uncharacterized protein
STRING	XP_009347087.1	1e-130	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5101	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	7e-63	G2-like family protein

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]