PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr021399.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 466aa    MW: 50920.2 Da    PI: 9.4701
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr021399.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix491.6e-1522114272
     trihelix   2 WtkqevlaLiearremeerlrrgk......................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                  Wt  e++ Liea++ ++er  +++                       ++ +W++v ++++++g+ rs++qC++kw+nl ++ykk++e e+k t
  Pbr021399.1  22 WTVGETMILIEAKKMDDERRMKRSgggeggssssggtdqttrsmgkPAELRWKWVEDYCWKKGCLRSQNQCNDKWDNLMRDYKKVREYERKIT 114
                  *************96666555543355566667777777777777799*****************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.22614100IPR017877Myb-like domain
PfamPF138371.8E-1121112No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MAGQGGNGTS SVIMRDYRKG NWTVGETMIL IEAKKMDDER RMKRSGGGEG GSSSSGGTDQ  60
TTRSMGKPAE LRWKWVEDYC WKKGCLRSQN QCNDKWDNLM RDYKKVREYE RKITNVGEGK  120
GEEGSASYWK LEKNERKERN LPTNMVLQIY EALVDVVERR EAGGGGGGYQ IRGHQVVGGA  180
SVSGSNVGIS PNIGYGLERP IISTTGVHQQ PSSSLPPPPP PPPPVLQHHH QISVPTIAAL  240
PLLPPATLAA QPPPALQYAQ VMPTVGTLSL SLSLSLSLSP LNNYWIFHFY YSTKFVKKMH  300
KLLALKALRG RVNWSTNSSI HRFVELVQQH FDYWETCEII SDSDTSEHSD SPAKRRRRAS  360
GRGGGGGGGD QGGTSGTVSA STSSEVGTAI AGGASVIAEA LQSCEEREER RHREMLSLHE  420
RRLQIEETKT EINRQGINGL IDAINKLANS IHALASNKNQ QPPPN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr021399.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4562551e-37AM456255.2 Vitis vinifera contig VV78X217219.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028958802.10.0uncharacterized protein LOC103435230 isoform X1
TrEMBLA0A498IYR31e-136A0A498IYR3_MALDO; Uncharacterized protein
STRINGXP_009353922.11e-165(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68043242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.12e-54Trihelix family protein