PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr021393.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 306aa MW: 35114.4 Da PI: 8.5317

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr021393.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.7	1.3e-50	26	155	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 + pGfrFhPtdeelv +yL++kve+k++++ + ik++diyk++PwdLp ++ + ++kewyfF++r +ky+++ r+nr+tksg+Wkatg dk+v+s Pbr021393.1 26 MLPGFRFHPTDEELVRFYLRRKVENKPIRF-DLIKHIDIYKYDPWDLPkASGSVGDKEWYFFCRRGQKYKNSIRPNRVTKSGFWKATGIDKPVYSVgd 122 579************************9.99***********445555999**********************************855 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +glkk+Lv+y+g+a kg+ktdW+mhe+rl Pbr021393.1 123 FHSCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 155 4556*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.81E-56	21	184	IPR003441	NAC domain
PROSITE profile	PS51005	54.345	26	184	IPR003441	NAC domain
Pfam	PF02365	3.1E-26	28	155	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MEVVNQKMMS TCDSNNMIHK DQDANMLPGF RFHPTDEELV RFYLRRKVEN KPIRFDLIKH 60 IDIYKYDPWD LPKASGSVGD KEWYFFCRRG QKYKNSIRPN RVTKSGFWKA TGIDKPVYSV 120 GDFHSCIGLK KSLVYYRGSA GKGTKTDWMM HEFRLSANSS NDTSGIKNST QEAEVWTLCR 180 IMKRNNTSSG KYTSNWHKTT LNPKQSVADS SSKTCSSESD TTFGALAAKD QSERSPLVHN 240 DHIYEGNPFF RDQLSLKDEV IDPYSYISFP NSPNEYEMLT SNGNWDELRP MVDCVLNPSL 300 LFSYS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-46	18	186	3	170	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr021393.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU794447	6e-32	EU794447.1 Malus floribunda clone M18-6Bs Vf apple scab resistance protein HcrVf2-like gene, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009353916.1	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	4e-86	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A498IUB4	0.0	A0A498IUB4_MALDO; Uncharacterized protein
STRING	XP_009353916.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1013	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	2e-83	NAC domain containing protein 42

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]