PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr020940.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 213aa    MW: 23096.4 Da    PI: 6.4123
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr020940.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.2e-053759123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C + F++   L  H+++H
  Pbr020940.1 37 YTCKFCRREFRSAQALGGHMNVH 59
                 9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.77E-63464No hitNo description
SMARTSM003550.00713759IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1363764IPR007087Zinc finger, C2H2
PfamPF139121.4E-53760IPR007087Zinc finger, C2H2
PROSITE patternPS0002803959IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MWNPKPVQEP EDDSWEVRAF AEDTGNVMGT TWPPRSYTCK FCRREFRSAQ ALGGHMNVHR  60
RDRARPHQSH PQMNPAAISS ASTSSFIIPT QELVNRNGGL CLVYQLPSPS SINDASFNTA  120
TTLMSSSSTN GHGVESSPST LLSVSPNIPP HDYLVSVVPP AGRSNSNSQY CHSNKSSAHD  180
DPEPLTSGTE NGNFEELDLE LRLGHGRPAI PS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-133259229superman protein
2l1o_A4e-133259229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr020940.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009377082.11e-156PREDICTED: uncharacterized protein LOC103965740
TrEMBLA0A498HL361e-142A0A498HL36_MALDO; Uncharacterized protein
STRINGXP_009377082.11e-156(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-37C2H2 family protein