PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr020833.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | WOX | ||||||||
Protein Properties | Length: 231aa MW: 26040.3 Da PI: 8.7474 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 47.5 | 3.1e-15 | 2 | 49 | 15 | 57 |
HHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 15 LeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 Le+++++ r+psae++++++++l +++ ++V++WFqN++a++++ Pbr020833.1 2 LENFYKQgVRTPSAEQIQQITSRLkafgHIEGKNVFYWFQNHKARQRQ 49 99****99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 87.3 | 1.7e-28 | 1 | 51 | 15 | 65 |
Wus_type_Homeobox 15 iLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +Le+ yk+G+rtP++e+iq+it++L+++G+ie+kNVfyWFQN+kaR+rqkq Pbr020833.1 1 MLENFYKQGVRTPSAEQIQQITSRLKAFGHIEGKNVFYWFQNHKARQRQKQ 51 69***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.625 | 1 | 50 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-5 | 1 | 49 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.27E-8 | 1 | 53 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 6.1E-13 | 2 | 49 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.64E-4 | 2 | 51 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010654 | Biological Process | apical cell fate commitment | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0090451 | Biological Process | cotyledon boundary formation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MLENFYKQGV RTPSAEQIQQ ITSRLKAFGH IEGKNVFYWF QNHKARQRQK QKQESIAYNR 60 LLHRRTTQPI FLPPYDLNPP CPNVMCSPYY VPVHSELGFY PQSPYPNKVP LPGVPNVVKR 120 RPRAEKLEKR RTTCTTGGAG YEPMHPHNGY NTSGGSDMVN DATSKLISKC DQQTLPLFPL 180 QPTGILQQGR EDQNYPCTVN DADCSSAALI DSSADQIVGD QQPFYDFFSG * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr020833.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009353812.1 | 1e-174 | PREDICTED: WUSCHEL-related homeobox 2 | ||||
TrEMBL | A0A498IMG3 | 1e-163 | A0A498IMG3_MALDO; Uncharacterized protein | ||||
STRING | XP_009353812.1 | 1e-173 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8256 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 1e-45 | WUSCHEL related homeobox 2 |