PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr020546.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | TCP | ||||||||
Protein Properties | Length: 221aa MW: 24008.2 Da PI: 7.1293 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 112.8 | 4.6e-35 | 56 | 150 | 4 | 89 |
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.........k 89 ++ + ++hTkv+gR+RRvR++a caar+F+L++eLG+ +d++tieWLl+ a+p+i+++tg+++ +a+ ++ s s+s++ +s + + Pbr020546.1 56 SRRNTRDRHTKVNGRGRRVRMPAMCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGSGTLPAEPISTTSPSVSSQMPSVTcrvqplkslR 150 67899*********************************************************988887775555555555444444444443331 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.7E-30 | 59 | 153 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.963 | 60 | 114 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MASEMALQPL HKLEDRKPTV LPTAVLTSAT IQTAPSLSQL SDLQLQAQPK PQKQVSRRNT 60 RDRHTKVNGR GRRVRMPAMC AARIFQLTRE LGHRSDGETI EWLLRHAEPS IIAATGSGTL 120 PAEPISTTSP SVSSQMPSVT CRVQPLKSLR SSGQFLYPAA AQAHQAMQLQ LDLCQPMGAD 180 YNAGYRHMPF TSLLLQTGES EVEEGQAEEE VVGVGIGDDE * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr020546.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009376810.1 | 1e-161 | PREDICTED: transcription factor TCP11 | ||||
Swissprot | Q9SJK7 | 3e-36 | TCP11_ARATH; Transcription factor TCP11 | ||||
TrEMBL | A0A498IFK3 | 1e-135 | A0A498IFK3_MALDO; Uncharacterized protein | ||||
STRING | XP_009376810.1 | 1e-161 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37000.1 | 6e-36 | TCP family protein |