PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr020045.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family G2-like
Protein Properties Length: 338aa    MW: 37278.6 Da    PI: 9.2244
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr020045.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1017.6e-32149202255
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Pbr020045.1 149 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 202
                  9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.67E-15146203IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-28147203IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-23149202IPR006447Myb domain, plants
PfamPF002492.2E-7150201IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MSSNPSMMKK ISLPLPDLSL QISPPSSADD LPYDIGVTRK ALYSTDRSSA TDSGTSGSDL  60
SQEHGFYHLE RSGSYNRASA VEEPKLSLGF DEGKDHHHHM ASPPPRALQM PRNFNSNHYF  120
NHHHPQIYGR EFKRSARTVG GVKRSIRAPR MRWTTTLHAH FVHAVQLLGG HERATPKSVL  180
ELMNVKDLTL AHVKSHLQMY RTVKSTDNKG TGHEGQTDMG LSQNPGINPA IQVNGQLSCG  240
ANTNRGLWPS LTEITNGSSN LRHGHGLTYS HSPPSNGTKV EEEDSGRRHV YAQSLKERPT  300
LDCSSLASSD MYLNLEFTLG RPSGEWTVLN NLNLQMT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-16150204357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-16150204357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-16150204357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-16150204357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr020045.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2834731e-125KP283473.1 Prunus incisa isolate 462-2010A aberrant testa shape (ATS) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009364143.10.0PREDICTED: probable transcription factor KAN4
TrEMBLA0A498HQW90.0A0A498HQW9_MALDO; Uncharacterized protein
STRINGXP_009364143.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44633358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.14e-56G2-like family protein