PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019905.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 562aa    MW: 63826.9 Da    PI: 6.0043
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019905.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.56.5e-27372455185
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                  rW+++ev aLi +r  +e+++ +  +k++ Weevs+ m++ g+++s+ +Ck+kwen+nk+++k+k+++kkr + +s+tc+yf+ql
  Pbr019905.1 372 RWPQSEVEALILVRGTVESKFVELGSKGHVWEEVSALMASMGYQKSARRCKQKWENINKYFRKTKHTAKKR-PLQSKTCSYFNQL 455
                  8*********************************************************************8.9***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.168365429IPR017877Myb-like domain
PfamPF138371.8E-19371457No hitNo description
CDDcd122031.70E-22371436No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MQSNFGAAEI GNQHFMDSNS SVLPVFNPQK QNQDFLHQQF HQQQPQPFHH LSQLAHPIPI  60
THDLFQRQNQ LQFQALLQQQ QQAQQEEGRL PWQPSPPSFK LGLSESSGPH NLGFKNWKTQ  120
EYYGIRRESM CWKPLDAVVA DTTNKRQRQE EGESCRDLEG KQRLYGELEA IYSLAKMGEA  180
NQNQTGSGSA LTGENCSKNV EFPVVFVDPN GLNAAPADNV RVDNVSEASI GEELSVGKIQ  240
KRKRKRKMKE QLSSMTRFFE NLVKQVVDHQ ENLHKKYLEV IEKMGKERRE REEAWRYQAE  300
ENHKRETMAK LHEQALASSR EALIVSYIEE ITGQRVNLPP RQTPLLLQPD NVSEPQTAEE  360
LTPPQAVRTN SRWPQSEVEA LILVRGTVES KFVELGSKGH VWEEVSALMA SMGYQKSARR  420
CKQKWENINK YFRKTKHTAK KRPLQSKTCS YFNQLGQLYS KTPTTVPSSS SSVSMDVSIQ  480
GQGYSELLEA FVAGRETEVT HNLSNGNFEI SEMGFSRLDF NGISNGKVEN VQGDHGKEKE  540
NDEDGENMDE GEDTDGDDSE E*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240246KRKRKRK
2240247KRKRKRKM
3241246RKRKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00651PBMTransfer from LOC_Os02g01380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019905.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009362685.10.0PREDICTED: trihelix transcription factor GT-2-like
TrEMBLA0A498HNH90.0A0A498HNH9_MALDO; Uncharacterized protein
STRINGXP_009362685.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139981421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-40Trihelix family protein