PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019600.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 393aa    MW: 44297 Da    PI: 9.9486
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019600.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.23.9e-15132214290
                  EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                  +k +++s+v+   +l lpk f++++  +k ++  ++l de+g + ev +  +k++    l++GW++F+ ++gL +gD +vF+l++ ++ 
  Pbr019600.1 132 VKPMLQSHVTGGFWLGLPKYFCSKNL-PK-RDDIVILIDEDGDECEVIYLAEKRG----LSGGWRGFAIDHGLVDGDALVFQLIRPKTL 214
                  68999*****************9994.43.4558***************545554....9**********************9985544 PP
2B3505.4e-16301384190
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                  f+k++++s+v+   +l l  +f+++h ++k ++  +tl de+g++++  +  rk++    l++GWk+F+ a++L +gD +vF+l++ ++f
  Pbr019600.1 301 FVKTMLQSHVTGGFWLGLQVSFCKNH-LPK-GEEIMTLIDEDGNEYTTIYLARKTG----LSGGWKGFAVAHDLVDGDALVFQLIRPTTF 384
                  89*********************888.343.3348***************656665....************************986665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.63E-20125216IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-16125217IPR015300DNA-binding pseudobarrel domain
CDDcd100177.42E-23129213No hitNo description
SMARTSM010194.3E-18131222IPR003340B3 DNA binding domain
PROSITE profilePS5086310.306131222IPR003340B3 DNA binding domain
PfamPF023621.0E-12132214IPR003340B3 DNA binding domain
SuperFamilySSF1019361.04E-21294387IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-18295386IPR015300DNA-binding pseudobarrel domain
CDDcd100171.21E-24299386No hitNo description
PROSITE profilePS5086310.701301392IPR003340B3 DNA binding domain
PfamPF023621.4E-13301385IPR003340B3 DNA binding domain
SMARTSM010196.7E-21301392IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MVAPKLSYEE SRRQRMEENK KRMEALNLPM LAQALKKTPN SPKPSPMKRA KARTVEKQLV  60
EVRRSSRVAN LPTPVYKEVA VVDREMRPIR YSTNRHRDLS NRVYASDEAR DDATARAEAL  120
ESDLGSDYPT MVKPMLQSHV TGGFWLGLPK YFCSKNLPKR DDIVILIDED GDECEVIYLA  180
EKRGLSGGWR GFAIDHGLVD GDALVFQLIR PKTLKMKRAG KPRTYEVKMV EVRRSTRVAN  240
RPAPDYKEVV AERVMIPRRC YATNRHRDMA NRVYASDEAR AAAMVKADEL ELSLGSDHPT  300
FVKTMLQSHV TGGFWLGLQV SFCKNHLPKG EEIMTLIDED GNEYTTIYLA RKTGLSGGWK  360
GFAVAHDLVD GDALVFQLIR PTTFKVIGKA AK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019600.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009359118.11e-156PREDICTED: B3 domain-containing protein At3g19184-like
RefseqXP_009359125.11e-156PREDICTED: B3 domain-containing protein At3g19184-like
RefseqXP_009359337.11e-156PREDICTED: B3 domain-containing protein At3g19184-like
RefseqXP_009359344.11e-156PREDICTED: B3 domain-containing protein At3g19184-like
SwissprotQ69V363e-69Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLA0A498JD230.0A0A498JD23_MALDO; Uncharacterized protein
STRINGXP_009359118.11e-155(Pyrus x bretschneideri)
STRINGXP_009359337.11e-155(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.14e-59B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]