PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019422.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 512aa    MW: 58232.6 Da    PI: 4.4854
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019422.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS123.91.8e-3816350838374
         GRAS  38 mqRlaayfteALaarlarsvselykalppset...seknsseelaalklfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqa 131
                  ++ l + f eA++    + ++ +++ l+ ++    ++++ ++  aa+klf++++P+ +f+h +aN aIl+a+ ++ e+vH++ fdi++G+Q   L++a
  Pbr019422.1 163 IHHLLKAFGEAMEMGQRELGKVIMRCLAEKHRdylKQESCKNFEAAFKLFYQIFPFGRFAHYAANTAILKAIPEDvETVHVVEFDIGEGVQLSQLIEA 260
                  55566666666665555544455544433333000334477788999*************************9998********************** PP

         GRAS 132 LasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlvakrledleleeL.rvkp....gEalaVnlvlqlhrlldesv 218
                   a+R++    l++T+++    +       + + eet+++L++ A+++g++++ + +   ++edl ++e+ +v++    +E +a n ++ l ++ + s 
  Pbr019422.1 261 VAKRNKT---LKVTAIKWDVDErdevapPQWRFEETKRQLQHHARSFGLNLKMEEI---TIEDL-VSEIkKVNKrggrREFIAFNTMVGLPHMRR-SR 350
                  ****765...******986555678899999************************9...55555.3333123324466**************973.33 PP

         GRAS 219 sleserdevLklvkslsPk....vvvvveqe...adh.nsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerre 307
                   ++    e+L+l k+l  +    ++++ + +   + + n++sF   f   + +y +l++sle+++p++  e+r+++E  ++++ +++     + +   
  Pbr019422.1 351 -SRGLVMEFLRLAKDLLNNsaggIITFGDGDacvL-RgNDSSFSSFFDANVVHYKTLLESLESTFPSHLgEARMVMELLFVAPYVSSQAWLDKWNEAR 446
                  .333478*******9954333449*******6433.26****************************99989999999999999999988888888666 PP

         GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.eesgslvlgWkdrpLvsvSaWr 374
                  + ++l++W      +G++  ++s ++ ++ak +++  +s g r+  e+ +++ + W++ pLv+v  W+
  Pbr019422.1 447 EGRNLQSW------FGLEGRRVSGEMLTEAKEMVEADSSYGLRIGgENANEMAMEWNGIPLVTVETWT 508
                  66667777......8*****************************978899999***********9995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.65399487IPR005202Transcription factor GRAS
PfamPF035146.3E-36163508IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MMQSEMFQTL WPYLNVTNSP LDTNEYTDQM GSSEFSSIFM ASDEFSETSF PFSSMFSGEF  60
EQVADCDHLL QVISTEVEEF PMELGGFEPN FFIDQYENMY PSCLEGSEGR NTLPSQQFSV  120
EGNDVWSPNS FVTSETSFMD VTSVQQSITL PRDEMEIDNK VSIHHLLKAF GEAMEMGQRE  180
LGKVIMRCLA EKHRDYLKQE SCKNFEAAFK LFYQIFPFGR FAHYAANTAI LKAIPEDVET  240
VHVVEFDIGE GVQLSQLIEA VAKRNKTLKV TAIKWDVDER DEVAPPQWRF EETKRQLQHH  300
ARSFGLNLKM EEITIEDLVS EIKKVNKRGG RREFIAFNTM VGLPHMRRSR SRGLVMEFLR  360
LAKDLLNNSA GGIITFGDGD ACVLRGNDSS FSSFFDANVV HYKTLLESLE STFPSHLGEA  420
RMVMELLFVA PYVSSQAWLD KWNEAREGRN LQSWFGLEGR RVSGEMLTEA KEMVEADSSY  480
GLRIGGENAN EMAMEWNGIP LVTVETWTNQ S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-1420950780374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019422.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018507386.10.0PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 26
TrEMBLA0A498K1N20.0A0A498K1N2_MALDO; Uncharacterized protein
STRINGXP_008370545.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.12e-15GRAS family protein