PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019381.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 317aa    MW: 36287.6 Da    PI: 9.9936
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019381.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3474.6e-1514101198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ffkvl   d ++++ l +p  f+ +++gk ++  +  l++  g +W v l  +k+ +r++++kGWkeFv++ng +  +f+vF++ ++ +f  +v ++ 
  Pbr019381.1  14 FFKVL--VDDFSTQ-LQIPLAFLVHFDGKVPQ--ETHLQT-PGGTWPVSL--EKRNDRFFFQKGWKEFVQDNGFQLCEFLVFRYYEKLGF--YVDIYG 101
                  88999..8888887.********999777555..566555.6789*****..*******************************8765555..777765 PP
2B348.81.2e-15204294194
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  ffkv ++ +++  g l lp  f+++h    e++ + tl+ ++gr W vk+ ++  + ++ + +GW+ Fvk+ngL+ gD++vF l+++ ef + v
  Pbr019381.1 204 FFKVPLRFSYTHYGYLALPGMFVKAHLT--ERPSDATLRVSDGRIWPVKVGFDVAG-HCRFLSGWSLFVKDNGLEIGDICVFVLINKIEFLFEV 294
                  666666677778899***********63..366689999***********996665.444556********************99876664444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-1811105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-2111105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.89911103IPR003340B3 DNA binding domain
CDDcd100171.27E-141289No hitNo description
SMARTSM010194.9E-1214103IPR003340B3 DNA binding domain
PfamPF023625.0E-1314100IPR003340B3 DNA binding domain
SuperFamilySSF1019361.22E-21199293IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-19200293IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.239204298IPR003340B3 DNA binding domain
PfamPF023622.9E-14204298IPR003340B3 DNA binding domain
CDDcd100172.51E-17204298No hitNo description
SMARTSM010194.3E-10205300IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MMMARSNAVR APTFFKVLVD DFSTQLQIPL AFLVHFDGKV PQETHLQTPG GTWPVSLEKR  60
NDRFFFQKGW KEFVQDNGFQ LCEFLVFRYY EKLGFYVDIY GRNGCKKEFV AVIRKRDRPH  120
EEAHGNAVHR KTPRNHGKQN VDNQGLKGLA HGTGTSRATH ANIQIKDEVT NDREYELSMH  180
RRATRTENAV ALQRGNGFEY RNPFFKVPLR FSYTHYGYLA LPGMFVKAHL TERPSDATLR  240
VSDGRIWPVK VGFDVAGHCR FLSGWSLFVK DNGLEIGDIC VFVLINKIEF LFEVVLHRKI  300
GAVSPYLSPG KQSVMQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00517DAPTransfer from AT5G18090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019381.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009376506.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like
TrEMBLA0A498I0340.0A0A498I034_MALDO; Uncharacterized protein
STRINGXP_009376506.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16060710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.11e-22B3 family protein