PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019318.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 256aa    MW: 29184.4 Da    PI: 10.0123
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019318.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.86.8e-191150342
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                 i+n+s r+ tf kRr+g++KK +ELS+LCd++++ ii+s+
  Pbr019318.1 11 ISNDSSRKATFKKRRKGLMKKVSELSTLCDVQACAIIYSP 50
                 9**************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.5E-25160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.264149IPR002100Transcription factor, MADS-box
CDDcd002661.32E-35285No hitNo description
SuperFamilySSF554551.57E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-12323IPR002100Transcription factor, MADS-box
PfamPF003194.0E-191151IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-122338IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-123859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MTRTKVKLTY ISNDSSRKAT FKKRRKGLMK KVSELSTLCD VQACAIIYSP YDSQPELWPS  60
PLGVQRVLAQ FKTMPEMEQS KKMVNQESFL RQRIAKANEQ LKKQRKDNRE KEMTRVMFQS  120
LMGKSQLHGL GMVDLNDLGW LIDQNLKEID NRMKNLNEQD SKSQVQLQPT ALPVAAATVA  180
ERGVERQQGF ELNNNVGTAV QRQQQPFFMD MMNVPQDHQQ QQMAGIGGGY EMNMLPFAAD  240
QSQINAIWSN SSFYP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12125KKRRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019318.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009376202.10.0PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK32e-66AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A498JAX61e-173A0A498JAX6_MALDO; Uncharacterized protein
STRINGXP_009376202.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-68AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]