PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr018915.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 681aa    MW: 75025.9 Da    PI: 9.5557
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr018915.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07582631147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
      Pbr018915.1 582 RRPFSVTEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 631
                      678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.59E-7391481IPR029071Ubiquitin-related domain
CDDcd017690.00327400467No hitNo description
PROSITE profilePS5129415.731577636IPR017930Myb domain
SMARTSM007173.5E-7581634IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-10582632IPR009057Homeodomain-like
SuperFamilySSF466891.37E-15583664IPR009057Homeodomain-like
CDDcd116605.93E-17583633No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MVMQKRLDYG FNGYQVPVTP KASRSARKRR AVRKMVEDNA MGAFDLLATV AGKLLLEGES  60
SPASSHTSIG KDQCAGIKEN YLAGDKTLKA EPCDRGSSDR IPLVSEYKST GQNLSSCSKA  120
SPVHQIESHS VMTTSDCSER FVSDMLASGK CKNELGSLTG KIEAGYSGNR ESGECKLDNE  180
VKVLVKDETN KSGEVVTSTG PDMCSFQDPV VWEGEPPPLL SSDSSTKVPM YVDHIPQRSF  240
PASRDDVKLV GRDDDENFFG CTHPSTAMKY SRPAPSRIGD RRIRKILASK YWKVAPKSKD  300
ETHSNSYRDM KPNYHNRKNC YKRQRSQMNM PFKKRRLFDR STVPNPDQGI SREGFFDLRG  360
KGTKGNASAS CSKMQATGMS SSVGGQHSSF QSRNSHVKLR IKSFRVPELF IEIPETATVG  420
SLKKTVMEAV TAVLGGGLCV GVLLQGKKVR DDNKTLLQTG ISQDDHLDSV GFSLEPNPSR  480
TPPPLCSDGS PSMLPCDDVK PLTRYQPGPT GEPLPEPHLA SFGSYIESDH DSAPSPTDMS  540
AEKSTTDSKA LVAVPDVSVD ALAVVPGNRK SRRFDIGQRR IRRPFSVTEV EALVQAVEKL  600
GTGRWRDVKL RAFDNAKHRT YVDLKDKWKT LVHTARISPQ QRRGEPVPQE LLDRVLTAHA  660
YWSQQQAKQQ LKQPETCLLV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A4e-565666721107Telomere binding protein TBP1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr018915.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009375900.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X2
TrEMBLD9ZJ810.0D9ZJ81_MALDO; MYBR domain class transcription factor
STRINGXP_009375899.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-136TRF-like 2