PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr018663.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB_related | ||||||||
Protein Properties | Length: 325aa MW: 35277.8 Da PI: 8.4659 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37 | 8e-12 | 60 | 104 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +W++ E++++++a +++ + Wk+I + +g +t q++s+ qky Pbr018663.1 60 RESWSEPEHDKFLEALQLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 104 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.17E-15 | 54 | 110 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.315 | 55 | 109 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 8.4E-18 | 58 | 107 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.9E-5 | 58 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-9 | 59 | 107 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-9 | 60 | 104 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.86E-7 | 62 | 105 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MVSKNPNLPE GLYLDPDVNG MALPGLGPFA PVTATASTTS SSAEDLSKKI RKPYTITKSR 60 ESWSEPEHDK FLEALQLFDR DWKKIEAFIG SKTVIQIRSH AQKYFLKVQK NGTSEHLPPP 120 RPKRKAAHPY PQKASKNALA LPPVSGSCLS SSALLESGFN QRPDSSSMLM SPIPGPVAPS 180 WTNGSVQSAN PSHESKGVSG PATVQNNSCS TTESTPKAQP VGGTTDQVNH SHALRVLPDF 240 TQVYGFIGSV FDPNVTGHMQ NLKKMDPIDV ETVLLLMRNL SMNLTNPDFE DHRQLLSSYK 300 MDADTGNLSD ATKGRCDDRH EKVA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00625 | PBM | Transfer from PK02532.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr018663.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ074476 | 0.0 | DQ074476.1 Malus x domestica MYBR5 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009375536.1 | 0.0 | PREDICTED: protein REVEILLE 6-like isoform X1 | ||||
Swissprot | Q8H0W3 | 1e-118 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A498KRN2 | 0.0 | A0A498KRN2_MALDO; Uncharacterized protein | ||||
STRING | XP_009375536.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1119 | 33 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.1 | 1e-104 | MYB_related family protein |
Publications ? help Back to Top | |||
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