PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr017966.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB | ||||||||
Protein Properties | Length: 175aa MW: 19928.4 Da PI: 6.6822 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.1 | 4.8e-14 | 2 | 43 | 7 | 48 |
HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 eEd++l+++++ +G g W++ a+ g++Rt+k+c++rw++yl Pbr017966.1 2 EEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYL 43 9***************************************97 PP | |||||||
2 | Myb_DNA-binding | 56 | 8.8e-18 | 49 | 92 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++ Pbr017966.1 49 RGNITPEEQLLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 92 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.632 | 1 | 43 | IPR017930 | Myb domain |
CDD | cd00167 | 7.58E-9 | 2 | 43 | No hit | No description |
SuperFamily | SSF46689 | 2.23E-26 | 2 | 90 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.0E-13 | 2 | 43 | IPR001005 | SANT/Myb domain |
SMART | SM00717 | 4.6E-5 | 2 | 45 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-19 | 2 | 50 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.859 | 44 | 98 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-15 | 48 | 96 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-16 | 49 | 92 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-25 | 51 | 97 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.36E-12 | 53 | 92 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MEEDLILINY IANHGEGVWN SLAKSAGLKR TGKSCRLRWL NYLRPDVRRG NITPEEQLLI 60 MELHAKWGNR WSKIAKHLPG RTDNEIKNYW RTRIQKHIKP AENITPGQSS EVNDQAITSQ 120 VSISNTVDTM DISHSAPTYQ ANMDAYPPPL PADQSNESYW SMEDLWSLQL LNGE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-21 | 2 | 98 | 13 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr017966.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009375123.1 | 1e-127 | PREDICTED: myb-related protein 305-like | ||||
Refseq | XP_009377203.1 | 1e-127 | PREDICTED: myb-related protein 305-like | ||||
Swissprot | P81391 | 1e-84 | MYB05_ANTMA; Myb-related protein 305 | ||||
TrEMBL | A0A498HIY5 | 1e-123 | A0A498HIY5_MALDO; Uncharacterized protein | ||||
STRING | XP_009375123.1 | 1e-126 | (Pyrus x bretschneideri) | ||||
STRING | XP_009377203.1 | 1e-126 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3305 | 34 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G40350.1 | 1e-83 | myb domain protein 24 |
Publications ? help Back to Top | |||
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