PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr017838.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 447aa    MW: 50958.3 Da    PI: 6.2929
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr017838.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix69.28e-22119215185
     trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                  +Wt++ v++Li+++  ++++ + ++           +kk++W+ vsk m ++g+++sp+qC++k+++lnkryk+++++ +++ +++++++ ++ d +
  Pbr017838.1 119 KWTDNVVRLLIDVVACVGDDGSVESseglkrksgilQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGtSCRVVENPALMDAM 215
                  7**************777777754335666777999**********************************************569999998888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.1E-19117242No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MDGSELGGGF LSGPSGGILD LESPVPRRQE MQLGHQLLGH QHHMNVMGGV AGDRHPIGLV  60
EVKGSIPKLG SIIGKGKAVA SFNANNGYNL SDEDEQNYTD DESIEGAKGK KGCPWQRMKW  120
TDNVVRLLID VVACVGDDGS VESSEGLKRK SGILQKKGKW KTVSKIMISK GCHVSPQQCE  180
DKFNDLNKRY KRLNDILGRG TSCRVVENPA LMDAMPHLSA KVKDDVRKIL SSKHLFYKEM  240
CAYHNGQRIP DCQDLDPHGY SLPLGRCSKD NNGSAEEEAE ENHDSEDDEL DNEDDNDAEN  300
DRERMRRMGE GKRVREEDGH LWPQYVLLDS FQVEMGEIFQ DPTKSLWERR DWIKKQKQQL  360
QEQRVSFQAE ALEIEKQRYK WLRYCSKKDR ELERLRLENE RMKLENERRV LQLRQKELEI  420
DLRRSEASLE PSSLGLGRDH IDLGRH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr017838.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009375065.10.0PREDICTED: uncharacterized protein LOC103963911
TrEMBLA0A498KCL90.0A0A498KCL9_MALDO; Uncharacterized protein
STRINGXP_009375065.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105463240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.17e-64sequence-specific DNA binding transcription factors