PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr017220.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NF-YA
Protein Properties Length: 349aa    MW: 37833.2 Da    PI: 8.6582
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr017220.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.63.5e-32172228158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  +ep+YVNaKQyq+Il+RRq+Rak+e e+kl +k rkpylheSRh+hA+rR+Rg+gGrF
  Pbr017220.1 172 QEPVYVNAKQYQGILRRRQARAKAELERKL-IKVRKPYLHESRHQHAMRRARGTGGRF 228
                  69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.9E-35170231IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.201171231IPR001289Nuclear transcription factor Y subunit A
PfamPF020459.0E-28173228IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.8E-24174196IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860176196IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.8E-24205228IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MQPKSEAENR LHPRTIPPSS VYSEPWWQSV GYNPISPTGT GRNASNSSSL ECPNGRSESN  60
DDQSLSNDEA NKDDDDTAKD SHITSPRSAG NYRQDHHNGK HAGSSVPTVR DDCLAQPPQL  120
ELVGHSIACA SNPYQDPHYG GMMAAYGHPP LGYPPFLGMP HARMPLPLEM AQEPVYVNAK  180
QYQGILRRRQ ARAKAELERK LIKVRKPYLH ESRHQHAMRR ARGTGGRFAK KPNGDTSNST  240
GQEKGTSSGP AQSSQSGSSS GSEPFPSDSA ETWNSPNSQR EARGSQVHDA YVAHNYANGS  300
GCYQPHGGLQ ASIYPSYSGK RGEEGDCTGQ QRGSISSNQA SQRRLAIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-18172228258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr017220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009374949.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X2
SwissprotQ9LXV51e-81NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBLA0A498K4Q20.0A0A498K4Q2_MALDO; Uncharacterized protein
STRINGXP_009374946.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40123461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.39e-80nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Siriwardana CL, et al.
    NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T.
    PLoS Genet., 2016. 12(12): p. e1006496
    [PMID:27977687]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]