PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016805.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HSF
Protein Properties Length: 554aa    MW: 61409 Da    PI: 4.7778
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016805.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.53.7e-321062172102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT...........XTTSEEEEESXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks...........kekiweFkhksFk 87 
                   Fl+k+++++ed++l+++isw + g+sfvv+d++ef++ +Lp+ Fkh+nf+SFvRQLn+Y  +kv+     + +           +++ weF+++ F+
   Pbr016805.1 106 FLSKTFDLVEDPSLDSIISWGSGGRSFVVWDPSEFSRFILPRNFKHNNFSSFVRQLNTYIVSKVQFFICMKVDgltlssgfrkvDTDKWEFANEAFQ 202
                   9***********************************************************99999888876667777777765449*********** PP

                   XXXXXXXXXXXXXXX CS
  HSF_DNA-bind  88 kgkkellekikrkks 102
                   kgk++ll++i+r+ks
   Pbr016805.1 203 KGKRHLLKRIQRRKS 217
                   *************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.3E-44102215IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.4E-34103215IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.85E-32103215IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.2E-14106129IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.1E-28106215IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-14144156IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-14157169IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MSPKDKSHPK SPPTSAEFDP ESIGLSGLSE FRLEVSEPLL GSQPIPSFTS PVMEFEAFSS  60
VNPLGAFDFT EKVSIPTSSM GGGGAEDVVV PPQPLECLQG TLVPPFLSKT FDLVEDPSLD  120
SIISWGSGGR SFVVWDPSEF SRFILPRNFK HNNFSSFVRQ LNTYIVSKVQ FFICMKVDGL  180
TLSSGFRKVD TDKWEFANEA FQKGKRHLLK RIQRRKSPQS LQVGSFTGPS AEAGKSGVEG  240
EIETLQKERS MLMQEVVELQ QQQRGTVDRM KVVNQRLQSA EQRQKQMVSF LAKMLQNPAF  300
VARLQQKTGQ KDRGSSRVRR KFVKHQQHEL SKSDSDMEGQ IVKYQPAWRN QIISSTAPDS  360
NPVPFEQSPH YPSQVTTGKL GLDAESTAFQ FVDAALDELA ITQGFLQTPE QEGEGASSMV  420
TEDPFFKGKS VLSPQQEANP KHYVSFEEDL LKDRTFPELF SPGMESMIKQ EDIWSMDFDI  480
SAGMSTSMNE LLGNPVNYDV PEVGVTGELL DVWDIDPLQE AGGLGINKWP AHESAFDEPQ  540
SQGVQSASKT TDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-2010321526129Heat shock factor protein 1
5d5v_B7e-2010321526129Heat shock factor protein 1
5d5v_D7e-2010321526129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208214LKRIQRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr016805.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009352999.10.0PREDICTED: heat stress transcription factor A-3-like
TrEMBLA0A498IJD10.0A0A498IJD1_MALDO; Uncharacterized protein
STRINGXP_009352999.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87823038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-83heat shock transcription factor A3