PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016723.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 464aa    MW: 51683.7 Da    PI: 6.4695
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016723.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.5e-13262307454
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +h +++r RR+++N++f++Lr+l+P++     +K++ a+i+  A+ YI++L
  Pbr016723.1 262 KHLAIDRGRRQQLNDKFFTLRSLIPNP-----TKNDRASIVGDAIGYINEL 307
                  7999***********************.....9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.583258307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.42E-14261324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-10261307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-12261319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.27E-10261311No hitNo description
SMARTSM003536.0E-10264313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MYQDTVSCNF DPNLLPPPPP PPPPQQPQVL MEELSFHHHH QNHHSSMEME LQNELGFNVD  60
NPYNTTTDHD TNINISHLVS FDHPTNWDNN IHGVHDQMQQ QFPDGTTSPT STPYPQPPDL  120
LNLFTLPRCS PSSLLQNSSI TFTNTLPKTS TSFGFLGDLP SAVDTPLGTA SSVLYDPLLH  180
LNLPPQPPMF RELHQSLPHG YTLPGSGNGS LFSSGGDERE GSGGGIYPDH GTINGSIFEN  240
GVMEFSREMG SIGRGRNLKG SKHLAIDRGR RQQLNDKFFT LRSLIPNPTK NDRASIVGDA  300
IGYINELLRT VDELKLLVEK KRRGRERSKR HKTEQDGGAG DDENCNVKFE PRDQSYNNGS  360
LRSSWLQRKS KDTEVDIRII HDEVTIKLVQ KKKINLLLSV SRLLDELQLD LHHVAGGHIG  420
NSYSFLFNTK MYEGSCLYAS AIAGKFIEVL DRQYSAVPPT SSY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00285DAPTransfer from AT2G31220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr016723.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009373826.20.0PREDICTED: transcription factor bHLH10-like
RefseqXP_009373851.20.0PREDICTED: transcription factor bHLH10-like
TrEMBLA0A498KLS30.0A0A498KLS3_MALDO; Uncharacterized protein
STRINGXP_009373826.10.0(Pyrus x bretschneideri)
STRINGXP_009373851.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37433262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.13e-61bHLH family protein