PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr016684.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | bHLH | ||||||||
Protein Properties | Length: 513aa MW: 56703.1 Da PI: 5.8284 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48.9 | 1.2e-15 | 302 | 350 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r++h + Er+RR+++N +f+ L+ l+P++ +K++ a+i+ A+eYI++L Pbr016684.1 302 KRTKHFATERQRRQQLNGKFDILKNLVPNP-----TKNDRASIVGDAIEYINEL 350 79****************************.....9***************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.063 | 301 | 350 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.9E-14 | 302 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.0E-13 | 302 | 350 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-16 | 302 | 369 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.71E-14 | 302 | 355 | No hit | No description |
SMART | SM00353 | 6.3E-12 | 307 | 356 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 513 aa Download sequence Send to blast |
MYQDTVACNF DPNSIPESAA ESVLDLNPLP PQPPPQQPPQ VLMPSSDTTH HHNTTTPGFG 60 VEANIRLSME EPSYHPHHHQ YHHSSMEIEL QNELGFSVDN SYTTNTDHNN NINNSHLVSF 120 EHPTNWDTTN IQGVHDQMQQ QFPDGTTSAT CTLYPQPPDL LNLFSLPRCS PSSLLQNSSI 180 TFTNPLPKTS NFPSSFGLLG DLPSAVDTPQ GTPSSVLYDP LLHLNLPPQP PLFRELLQSL 240 PHGYTLPGSG NGSLFGSGGD DREGSGGGVL YDPDGSLGRQ FDSGVLKFSR DMASNGIGRD 300 LKRTKHFATE RQRRQQLNGK FDILKNLVPN PTKNDRASIV GDAIEYINEL LRTVEELKLL 360 VEKKRCGRER IKRHKTEHDG AAAAADDESC NIQPLGEPHD QSYNNGSLRS SWLQRKSKDT 420 EVDIRIIDDE VTIKLVQRKK INLLLFVSRL LDELQLDLHH VAGGHIGNSY SFFFNTKMYE 480 GSCLYASAIA GKLIEVLDGQ YAAAVLPPTN SY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 301 | 313 | KRTKHFATERQRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr016684.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009373855.1 | 0.0 | PREDICTED: transcription factor bHLH91-like | ||||
Refseq | XP_009373874.1 | 0.0 | PREDICTED: transcription factor bHLH91-like | ||||
TrEMBL | A0A498KEK3 | 0.0 | A0A498KEK3_MALDO; Uncharacterized protein | ||||
STRING | XP_009373855.1 | 0.0 | (Pyrus x bretschneideri) | ||||
STRING | XP_009373874.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3743 | 32 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31220.1 | 4e-78 | bHLH family protein |