PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016404.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 368aa    MW: 42405.1 Da    PI: 8.4359
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016404.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00162042123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y C +Cg + s ks+  +Hi +H
  Pbr016404.1 20 YYCDYCGICRSKKSLIASHILSH 42
                 89*******************96 PP
2zf-C2H220.11.7e-066283223
                 EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                 +C+ Cg +F+ + +Lk+H+++H
  Pbr016404.1 62 TCEECGATFKKPAHLKQHLQSH 83
                 6*******************99 PP
3zf-C2H216.23e-0589113123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  y C+  dC+ s++rk++L+rH+  H
  Pbr016404.1  89 YICSvdDCHSSYRRKDHLTRHLLQH 113
                  89*******************9887 PP
4zf-C2H216.42.6e-05158182123
                  EEET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                  ++C+   Cgk F+  s L++H  +H
  Pbr016404.1 158 HVCQeiGCGKAFRYASRLQKHEESH 182
                  79*******************9988 PP
5zf-C2H219.52.6e-06249273223
                  EET..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                  kC    C ++F++ksnL +H r  H
  Pbr016404.1 249 KCDykGCRRTFTTKSNLSKHVRAvH 273
                  688889***************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.582047IPR007087Zinc finger, C2H2
SMARTSM00355252042IPR015880Zinc finger, C2H2-like
SMARTSM003550.00636183IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.5886188IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.1E-86288IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.02E-1062113No hitNo description
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
PROSITE profilePS501579.70289118IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-989115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01489113IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028091113IPR007087Zinc finger, C2H2
SuperFamilySSF576671.46E-599148No hitNo description
Gene3DG3DSA:3.30.160.601.3E-5116144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.138118148IPR007087Zinc finger, C2H2
SMARTSM003550.19118143IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280120143IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.9E-7154182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.52E-5155184No hitNo description
PROSITE profilePS5015710.907158187IPR007087Zinc finger, C2H2
SMARTSM003550.0086158182IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280160182IPR007087Zinc finger, C2H2
SMARTSM003558190215IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280192215IPR007087Zinc finger, C2H2
SMARTSM0035515218239IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.93E-9230286No hitNo description
PROSITE profilePS5015713.027248278IPR007087Zinc finger, C2H2
SMARTSM003553.9E-4248273IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.1E-7249273IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF138940.0012249273No hitNo description
PROSITE patternPS000280250273IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.3E-5274302IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.8279305IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280281305IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MDKGAGEKKE GPVVIDIRRY YCDYCGICRS KKSLIASHIL SHHKEEMEMA DGGEVGEENS  60
NTCEECGATF KKPAHLKQHL QSHSLERPYI CSVDDCHSSY RRKDHLTRHL LQHQGKLFEC  120
PVENCNLKFV FQGNIKRHVN ERHTEDCPSA DCGVQKQHVC QEIGCGKAFR YASRLQKHEE  180
SHVKLDTVEA FCFEPGCMKH FTNEQCLKVH IQSCHQHTTC KICGAKQLRN NMKRHLLTHE  240
GRGSIERIKC DYKGCRRTFT TKSNLSKHVR AVHLEHKPFV CSFSGCGMRF AYKHVRDNHE  300
KTGCHVYTHG DFEEADEQFR SRPRGGRKRQ CPDIPMLVRK RVTPPNRSAQ ESAYLSWLRS  360
QEDSDEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A3e-156521019155PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D3e-156521019155PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr016404.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009373254.10.0PREDICTED: transcription factor IIIA-like isoform X1
SwissprotQ84MZ41e-141TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A498HWX80.0A0A498HWX8_MALDO; Uncharacterized protein
STRINGXP_009373254.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-143transcription factor IIIA