PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016270.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HSF
Protein Properties Length: 281aa    MW: 31609.9 Da    PI: 8.5662
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016270.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.83e-32141112102
                   HHHHHHHHHCTG......GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
  HSF_DNA-bind   2 Flkklyeilede......elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                   Fl+k++++le++        ++++sw+ +g+ f+v+ ++ef++ +LpkyFkh+nf+SF+RQLn+YgFkk++++e         weFkh++F+kg +e
   Pbr016270.1  14 FLSKTFDLLEENdgrdggGKRNIVSWNVEGTGFIVWSPDEFSELLLPKYFKHNNFSSFIRQLNTYGFKKTSRKE---------WEFKHEKFQKGCRE 101
                   9*********87777777899*************************************************9998.........************** PP

                   XXXXXXXXXX CS
  HSF_DNA-bind  93 llekikrkks 102
                   +l +i rkk 
   Pbr016270.1 102 MLVEITRKKC 111
                   *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.1E-334104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.0E-3910109IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.67E-2510109IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.0E-2814109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-95870IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-97183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MATKSSRTRS TAPFLSKTFD LLEENDGRDG GGKRNIVSWN VEGTGFIVWS PDEFSELLLP  60
KYFKHNNFSS FIRQLNTYGF KKTSRKEWEF KHEKFQKGCR EMLVEITRKK CEPSAFPVYL  120
RASEESGSTS TAVAAAEENN CLLLLEENKN LRKQKLELQV QIAQFKTLES YTVKGLNGRE  180
EALLEDLMEK GKATTARSWE IVAAGYANRG ETEKAFKCMK AALCLSSEKR WKPNLRVVTT  240
VLSWLGDEGS AEDTEAFVGA LSNVIPVNTH MYQAGMCQRG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B7e-16111091104Putative transcription factor
5d5x_B7e-16111091104Putative transcription factor
5d5x_E7e-16111091104Putative transcription factor
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr016270.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9865252e-41FJ986525.1 Corylus avellana clone B728 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009352926.11e-122PREDICTED: heat stress transcription factor B-2a-like
TrEMBLA0A498IXH71e-103A0A498IXH7_MALDO; Uncharacterized protein
STRINGXP_009352926.11e-121(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113572839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-33heat shock transcription factor B2A