PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr016090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | HSF | ||||||||
Protein Properties | Length: 424aa MW: 47757.2 Da PI: 5.6575 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 109.5 | 2.5e-34 | 14 | 105 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+ye+++d+++++++sws++++sf+v+++ efa+++Lpk+Fkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F +g+ + +++i+ Pbr016090.1 14 FLSKTYEMVDDASTDSIVSWSASNKSFIVWNPPEFARDLLPKFFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFANDDFIRGQPHIMKNIR 101 9********************999****************************************9998.........******************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k Pbr016090.1 102 RRKP 105 *985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 3.54E-35 | 9 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.3E-62 | 10 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 1.1E-37 | 11 | 103 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.3E-30 | 14 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-19 | 14 | 37 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-19 | 52 | 64 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 53 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.1E-19 | 65 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000302 | Biological Process | response to reactive oxygen species | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 424 aa Download sequence Send to blast |
MEEVQGGTSS LPPFLSKTYE MVDDASTDSI VSWSASNKSF IVWNPPEFAR DLLPKFFKHN 60 NFSSFIRQLN TYGFRKIDPE QWEFANDDFI RGQPHIMKNI RRRKPVHSHS LQNLQVQGQG 120 TSLSEAERQS MKVEIERLKH EKERLGVEVQ RHEQERHGLE LQMQFLMDRL QDMEKQQQTM 180 AAFVARVLQK PGIASNPVPQ LEVRERKRRL PRISWSFDDA NSGYNQMVSS QAVIRESGSM 240 EKLEQLESFL TFWEDTIHDV SHNNIQVGSN READESTSGN ESTALSSIQL NADIRSKSPG 300 IDMNAEPPAS VAPKPAASQS SKEQTAGIAA SAPTTALIQQ TSKEKTDGTT ASAATGVNDV 360 FWEQFLTENP GTSEAQEVLI ERKDSDGKKN DSRPGDHGML WWNMRNVNNL TEQMGHLTPV 420 EKT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 2e-25 | 6 | 103 | 12 | 120 | Heat shock factor protein 1 |
5d5u_B | 2e-25 | 7 | 103 | 22 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-25 | 7 | 103 | 22 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-25 | 7 | 103 | 22 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 204 | 209 | ERKRRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00443 | DAP | Transfer from AT4G18880 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr016090.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR132192 | 0.0 | KR132192.1 Eriobotrya japonica heat shock factor 1 (HSF1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009352719.1 | 0.0 | PREDICTED: heat stress transcription factor A-4c-like | ||||
Swissprot | O49403 | 1e-123 | HFA4A_ARATH; Heat stress transcription factor A-4a | ||||
TrEMBL | A0A498ISU3 | 0.0 | A0A498ISU3_MALDO; Uncharacterized protein | ||||
STRING | XP_009352719.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3568 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18880.1 | 1e-123 | heat shock transcription factor A4A |
Publications ? help Back to Top | |||
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