PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015985.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family SBP
Protein Properties Length: 347aa    MW: 38474.3 Da    PI: 8.4454
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015985.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.27.6e-41187264178
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  +Cq+egC+adls+ k+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk+q+
  Pbr015985.1 187 RCQAEGCAADLSHSKHYHRRHKVCEFHSKASTVIANGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQ 264
                  6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.6E-34182249IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.18185262IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.16E-37186266IPR004333Transcription factor, SBP-box
PfamPF031101.4E-30188261IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MLDYEWGNPN NVVMLSPDTD SGSIHGSDPT RHHHQHNHAS TFLDHYASSQ ASAFNNLVPA  60
PPPPPPQPHH QTSTFADHFN PTHHQAQQLH SIYDPHAYAS ASTYAPPHHH HHHHHSMLGL  120
DPVHGGTANG LMLIPKTEDM CPPVDFASRI GLNLGGRTYF ASEDDFMNRL YRRSRPGSEI  180
TSTHSPRCQA EGCAADLSHS KHYHRRHKVC EFHSKASTVI ANGLTQRFCQ QCSRFHLLSE  240
FDNGKRSCRK RLADHNRRRR KTQQTIQAHH NSQHQQQPPL EKAQNSSSDN VASSPPESAA  300
LSVSSVTVAV SPPRMTLDCF RQRAPYQNAA ATTSSGSSAH FFSQVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-301882611184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr015985.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ3549645e-76JQ354964.1 Betula platyphylla squamosa promoter binding protein-like 8 (SPL8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009373190.10.0PREDICTED: squamosa promoter-binding-like protein 8
RefseqXP_009373191.10.0PREDICTED: squamosa promoter-binding-like protein 8
TrEMBLA0A498JF540.0A0A498JF54_MALDO; Uncharacterized protein
STRINGXP_009373190.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68013348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.12e-72squamosa promoter binding protein-like 8