PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015956.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 318aa    MW: 35766.6 Da    PI: 7.0164
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015956.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.3e-12181206126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  y   +C+++ +tG+C yGd+CkF+H+
  Pbr015956.1 181 YQPDICKDYKETGYCGYGDSCKFMHD 206
                  67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.44E-9177211IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7180207IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878180208IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-12181211IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-10181206IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.9E-13241298IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578502.04E-12256299No hitNo description
PfamPF139203.4E-8256297No hitNo description
CDDcd001623.04E-7257298No hitNo description
SMARTSM001842.7E-4257294IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.483257295IPR001841Zinc finger, RING-type
PROSITE patternPS005180272281IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MADSGGNPEP GKVCNFIPKS SMKQNIRRRR PHEDEEEDNS TYGGTTFPSQ RKAAKPDGKL  60
YFSSGPAKSS TSDGSAIFEF KSSKEIQVEN DSRATATLET ETEFSRDARA VRERVLKQAE  120
EALQGKSKET GNEKLYKGIH GYTDYKAGFR RELTVASEKA GGSHGPLRAS AHIRATTRFD  180
YQPDICKDYK ETGYCGYGDS CKFMHDRGDY KSGWQMEREW EEAEKTRKRN LALGQDDVDQ  240
SEDDDDDDED GSLPFACFIC RKPFVDPVVT KCNHYFCEHC ALKHHSKNKK CFVCDKPTLG  300
IFNTAHEVRK RMAAEGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M6e-65731237317RING finger protein 113A
5z58_M6e-65731237317RING finger protein 113A
6ff4_t6e-65731237317RING finger protein 113A
6ff7_t6e-65731237317RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr015956.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009373122.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX841e-157C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A498K8360.0A0A498K836_MALDO; Uncharacterized protein
STRINGXP_009373122.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-154C3H family protein