PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr015817.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | SRS | ||||||||
Protein Properties | Length: 230aa MW: 25571.5 Da PI: 9.1209 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 184 | 5.9e-57 | 15 | 158 | 5 | 153 |
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrer.qqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkele 101 +++CqdCGnq+kk+C+++RCRtCCk +gf+C+th kstWvp+++rr+ +qql ++ ++ ++ ++ ++ ++r+ +a+ + ++ ++s ++ + Pbr015817.1 15 GSRCQDCGNQSKKECVYMRCRTCCKGKGFHCQTHFKSTWVPVYRRRHAhHQQLPSTDPQHPTHLHQGHNYNPRR------TAAGHVIINPSSSGQNQH 106 679*******************************************9734455555555555555555555554......566667777777888899 PP DUF702 102 tsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++++P+ev+s+a frcvrv+s++d ++ aYqt++ igGhvfkGiLydqG++ Pbr015817.1 107 VNNFPAEVNSMANFRCVRVRSMEDTVDQQAYQTSMVIGGHVFKGILYDQGPD 158 9*************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 2.5E-53 | 15 | 158 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 8.5E-26 | 18 | 59 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.2E-21 | 110 | 157 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MVRQGRGGRE EEIMGSRCQD CGNQSKKECV YMRCRTCCKG KGFHCQTHFK STWVPVYRRR 60 HAHHQQLPST DPQHPTHLHQ GHNYNPRRTA AGHVIINPSS SGQNQHVNNF PAEVNSMANF 120 RCVRVRSMED TVDQQAYQTS MVIGGHVFKG ILYDQGPDYT TATGRSSSSQ HVMNKQTSNF 180 VNAAASASNI TASTSSAAAD QEVPHHHQLP SSYPLIPFNA FMPGTQFFL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr015817.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009373006.1 | 1e-174 | PREDICTED: protein SHI RELATED SEQUENCE 3 | ||||
TrEMBL | A0A498IYR1 | 1e-160 | A0A498IYR1_MALDO; Uncharacterized protein | ||||
STRING | XP_009373006.1 | 1e-173 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9969 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21400.1 | 9e-49 | SHI-related sequence3 |