PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015653.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 266aa    MW: 30078.9 Da    PI: 10.2385
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015653.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.71.7e-1451129181
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                  +W++  v  L+ea++ ++   +r+klk+++We+v++++      ++  ++++qCk+k+e+++kry+ + ++  +      s++p+
  Pbr015653.1  51 EWSEGAVASLLEAYETKWVLRNRAKLKGHDWEDVARHVssraNCTKSPKTQTQCKNKIESMKKRYRSESATGDG------SSWPL 129
                  5*************************************854444555566679*************99887665......23555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-1849130No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDGETNQENP SLPPNNHTTT TTKELESPPR SKPPQQPPLG GSGGDRLKRD EWSEGAVASL  60
LEAYETKWVL RNRAKLKGHD WEDVARHVSS RANCTKSPKT QTQCKNKIES MKKRYRSESA  120
TGDGSSWPLR FNMQEDAVGM KLSDHASDKN PLEVDSSTPA LYSDKEQLRS KRMKRKMEKK  180
KRRRREEVDV AESIRWLAEV VVRSEQARMD SMREIERMRV EAEAKRGEMD LKRTEIIANT  240
QLEIARLFAA GGGKGVDSSL RIGRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178183KKKRRR
2178184KKKRRRR
3179184KKRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr015653.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8532031e-155AB853203.1 Pyrus pyrifolia mRNA, microsatellite: TsuENH155.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009372813.11e-168PREDICTED: trihelix transcription factor ASIL1
TrEMBLA0A2R6R9T71e-111A0A2R6R9T7_ACTCH; Trihelix transcription factor
STRINGXP_009372813.11e-167(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49943350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.18e-89sequence-specific DNA binding transcription factors