PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr015419.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 681aa MW: 74629.9 Da PI: 7.4613

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr015419.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21	5.9e-07	140	159	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C++f++ G+Ck Gd C FaHg Pbr015419.1 140 CPDFRK-GHCKKGDACEFAHG 159 9***.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.0013	134	160	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.704	135	161	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.7E-5	140	162	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.2E-5	140	159	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.615	169	193	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	13	169	192	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence Send to blast
MTLGELHLEE LHRPNPTVHV PPSLPHDDST ADMYSPSPLS GNANGADFNS PYYLHEALTT 60 LQCYLPSNET DLDSDSDISG RESDAPIDAY SCDHVRMFEF KVRRCARGPS HDWTECPYAH 120 PGEKARRRDP RKYHYSGTGC PDFRKGHCKK GDACEFAHGV FEYWLHPSRY RTQPCKDGTS 180 CKRRVCFFAH TPEQLRVLPQ QSPRGGGNSL NEAESYEGSP LRQAMEAAAA SCVKTMPFVS 240 SRPEESPPVS PMSGPLGLGS INEMVASRRN LQFGKVKSFS SSRNVRTGGS SGFGSPVSPG 300 FGSPCGSMPR QQEEALVMEM QMQMKGYLKD SNVGAVVGVV TPTDSNVGVG GVVTPNGTAN 360 HELAAKVLPS HRSPPPTTPR PSLSLPSSLQ SIKFISSTIP NFHMHRYQLI FRILFQLSTS 420 SPGSSCGSQP CFSKLHINLW TVRAVTLKNA RLLPVAKDSW KMNEINTTEE AIPTRYYCYS 480 CCHLVTVDVE VEIKCPFCHD GFIQACGGVN SLYLTMSTES ELSESGSDGE VTSSEWILLL 540 TSCGIETLAS AFDQVSSPLN PHYALIGMLL AIVAVLVCIC ELLQNAIKER VVLRRRGMLW 600 CFHYPPPNNM LFGTFPEIFG LGLAIVQCIC SAVQYHFSRR HATSPIKLSP LPVVFAFSLV 660 VSKLVQSRRC TADDTLQNGT *

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence Send to blast

MTLGELHLEE LHRPNPTVHV PPSLPHDDST ADMYSPSPLS GNANGADFNS PYYLHEALTT  60
LQCYLPSNET DLDSDSDISG RESDAPIDAY SCDHVRMFEF KVRRCARGPS HDWTECPYAH  120
PGEKARRRDP RKYHYSGTGC PDFRKGHCKK GDACEFAHGV FEYWLHPSRY RTQPCKDGTS  180
CKRRVCFFAH TPEQLRVLPQ QSPRGGGNSL NEAESYEGSP LRQAMEAAAA SCVKTMPFVS  240
SRPEESPPVS PMSGPLGLGS INEMVASRRN LQFGKVKSFS SSRNVRTGGS SGFGSPVSPG  300
FGSPCGSMPR QQEEALVMEM QMQMKGYLKD SNVGAVVGVV TPTDSNVGVG GVVTPNGTAN  360
HELAAKVLPS HRSPPPTTPR PSLSLPSSLQ SIKFISSTIP NFHMHRYQLI FRILFQLSTS  420
SPGSSCGSQP CFSKLHINLW TVRAVTLKNA RLLPVAKDSW KMNEINTTEE AIPTRYYCYS  480
CCHLVTVDVE VEIKCPFCHD GFIQACGGVN SLYLTMSTES ELSESGSDGE VTSSEWILLL  540
TSCGIETLAS AFDQVSSPLN PHYALIGMLL AIVAVLVCIC ELLQNAIKER VVLRRRGMLW  600
CFHYPPPNNM LFGTFPEIFG LGLAIVQCIC SAVQYHFSRR HATSPIKLSP LPVVFAFSLV  660
VSKLVQSRRC TADDTLQNGT *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr015419.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	XP_009372717.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2056	31	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	2e-89	C3H family protein