PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr014934.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 570aa    MW: 61826.6 Da    PI: 7.1367
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr014934.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH283.8e-09386433455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Pbr014934.1 386 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 433
                  8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.72E-17380451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.43E-10380437No hitNo description
Gene3DG3DSA:4.10.280.101.0E-16382450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663382432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-6386433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10388438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MENDFFLNAG IPSPLLLEQA SSMPAWRSSF STAVDIQAAA VDQNCSLEQS PDCFYNPNWD  60
NKSTDQNIHF KSALSSMVSS PAASNSNISN ESFVIRELIG KLGSIGNSND LSSHSQLLLG  120
IQNSYMGRNG NASANTSCYS TPLNSPPKLN LPVPDHHLKK EKQPNLANSM ALNSSMADFS  180
ADPGFAERAA KFSCFGSRSF NGRTSQLGTN NNNSTEQPPF RSHPAAGNGG KLPRVSSSSS  240
IKALGSQTSM QEKMRALLQD RSELPNSLEE STISEQKPNG ETNSMDMNSR KRKSASKGKA  300
KDHNPPPISP SPTSTKGAEV NENSNAKRSK PSENNGNDQN GSVKAEEDAK GSTSSDEKQT  360
KTGPKPPEPP KDYIHVRARR GQATDSHSLA ERVRREKISE RMKLLQDLVP GCNKVTGKAL  420
MLDEIINYVQ SLQRQVEFLS MKLSSVNTRL DFNMETLMSK EIFQQNNGLP QHPIFPSDSS  480
AQAIYGHQRQ QNPALSNGAV DPLDNTSPCQ SLGMQLPPLS GFSSEGIPQF PAFGEDDLHT  540
IVQMGFGQNP TRESELLGSN QVSHMKIEL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1288293SRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr014934.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009372199.10.0PREDICTED: transcription factor bHLH62
TrEMBLA0A498IXG80.0A0A498IXG8_MALDO; Uncharacterized protein
STRINGXP_009372199.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-107bHLH family protein