PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr014753.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

FAR1

Protein Properties

Length: 791aa MW: 91168.5 Da PI: 7.5961

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr014753.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.2	3.7e-20	72	147	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YA ++GF+vr+ + ++s+++g++ +r+fvCskeg++ + +rtgC a ++v+++++gkw+v+ + ++HnH l Pbr014753.1 72 DFYTFYAAQMGFKVRTGQLYRSRTDGSVSSRRFVCSKEGFQIS--------------SRTGCPALIRVQRRDSGKWVVDLFLKDHNHGLE 147 6*************************************765..............699*************************996 PP
2	FAR1	67.3	4.1e-21	227	302	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA+++GF++r+ + +sk +g+it+r+fvCskeg++++ +r+gC a +++k++++g+w+v++++++HnHe+ Pbr014753.1 227 QFYHAYAENTGFRIRIGQLFRSKLDGSITSRRFVCSKEGFQHP--------------SRVGCGAYMRIKRQDSGRWVVDRFDKNHNHEFE 302 6*************************************999..............4899************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.7E-16	72	147	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.5E-16	227	301	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-26	402	494	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.004	676	712	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.8E-9	676	709	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.4E-9	687	714	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 791 aa Download sequence Send to blast
MGMESSSTHF TNIRSLDTDS KIEDGGNNLV IEAYPLGMMP PMNAVNAEDE GESGVPEPYV 60 GLEFDSADVA RDFYTFYAAQ MGFKVRTGQL YRSRTDGSVS SRRFVCSKEG FQISSRTGCP 120 ALIRVQRRDS GKWVVDLFLK DHNHGLESST EENHTLILQK KSSMPTKTVV EVSHRPKVKL 180 IKAIEDKPHC PSAVISAKRL KRGGEEMQSE IDLSAGLEFN SANEAYQFYH AYAENTGFRI 240 RIGQLFRSKL DGSITSRRFV CSKEGFQHPS RVGCGAYMRI KRQDSGRWVV DRFDKNHNHE 300 FESHLEVQKK NLFSSKKFIE EEIGGLEIED IVDINSGNLV KTRRENHIGS DWYSVLFDYC 360 QTRQAEDTGF FYAVEVDNGS CMSIFWADGR SRFSCSQFGD AIIFDTSYRK SIYLVPFVTF 420 IGINHHKQPV LLGCALVAVE SEKSFTWLFQ TWLRAMSGRR PLSIIADQDD MIQQAIMQVF 480 PGTHHRFSLW QIKAKESEHL SVMNSSFKYE YEKCIYQCQT ADEFETAWNA LLSRYGLKDN 540 AWLKAMYEKR RSWVPLYLRA TFFAGIPFNE SIESFFGARF NAQTSLKEFV SQYERGLERR 600 REEEIKEDFN SFNLKAYLQT KEPLEEQCRR LYTLNTFRVF QKELLQSYSY LGFKIYDEGA 660 IIRYLVRKCG NDDEKYVVTV GASIPEVSCS CRMFEFEGIL CRHVLRVFQI LDIKEVPPCY 720 ILRRWTRNAE YGIPCESELG GNPRELKTLM VWSLREAACK YIEAGATSLE KHKLAYEIMR 780 EGGRKLCWQR *

Sequence ? help Back to Top

Protein Sequence Length: 791 aa Download sequence Send to blast

MGMESSSTHF TNIRSLDTDS KIEDGGNNLV IEAYPLGMMP PMNAVNAEDE GESGVPEPYV  60
GLEFDSADVA RDFYTFYAAQ MGFKVRTGQL YRSRTDGSVS SRRFVCSKEG FQISSRTGCP  120
ALIRVQRRDS GKWVVDLFLK DHNHGLESST EENHTLILQK KSSMPTKTVV EVSHRPKVKL  180
IKAIEDKPHC PSAVISAKRL KRGGEEMQSE IDLSAGLEFN SANEAYQFYH AYAENTGFRI  240
RIGQLFRSKL DGSITSRRFV CSKEGFQHPS RVGCGAYMRI KRQDSGRWVV DRFDKNHNHE  300
FESHLEVQKK NLFSSKKFIE EEIGGLEIED IVDINSGNLV KTRRENHIGS DWYSVLFDYC  360
QTRQAEDTGF FYAVEVDNGS CMSIFWADGR SRFSCSQFGD AIIFDTSYRK SIYLVPFVTF  420
IGINHHKQPV LLGCALVAVE SEKSFTWLFQ TWLRAMSGRR PLSIIADQDD MIQQAIMQVF  480
PGTHHRFSLW QIKAKESEHL SVMNSSFKYE YEKCIYQCQT ADEFETAWNA LLSRYGLKDN  540
AWLKAMYEKR RSWVPLYLRA TFFAGIPFNE SIESFFGARF NAQTSLKEFV SQYERGLERR  600
REEEIKEDFN SFNLKAYLQT KEPLEEQCRR LYTLNTFRVF QKELLQSYSY LGFKIYDEGA  660
IIRYLVRKCG NDDEKYVVTV GASIPEVSCS CRMFEFEGIL CRHVLRVFQI LDIKEVPPCY  720
ILRRWTRNAE YGIPCESELG GNPRELKTLM VWSLREAACK YIEAGATSLE KHKLAYEIMR  780
EGGRKLCWQR *

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr014753.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009352139.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A251QXS7	0.0	A0A251QXS7_PRUPE; Uncharacterized protein
STRING	XP_009352139.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]