PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr014375.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 611aa    MW: 66076.6 Da    PI: 8.6254
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr014375.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.5e-09522565755
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  ++ ++RR+ri +++  L+el+P+ +      K++ +++LekA+ Y+k Lq
  Pbr014375.1 522 IAAKNRRERISERLKILQELVPNgC------KVDLVTMLEKAISYVKFLQ 565
                  5679*******************77......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF547681.89E-171496No hitNo description
PROSITE profilePS5013711.4562898IPR014720Double-stranded RNA-binding domain
Gene3DG3DSA:3.30.160.204.0E-182996IPR014720Double-stranded RNA-binding domain
SMARTSM003581.9E-92997IPR014720Double-stranded RNA-binding domain
CDDcd000481.03E-103096No hitNo description
PfamPF000351.3E-93092IPR014720Double-stranded RNA-binding domain
SuperFamilySSF547682.67E-17116181No hitNo description
PROSITE profilePS5013713.301116183IPR014720Double-stranded RNA-binding domain
SMARTSM003585.8E-11117182IPR014720Double-stranded RNA-binding domain
Gene3DG3DSA:3.30.160.207.7E-13118181IPR014720Double-stranded RNA-binding domain
CDDcd000483.54E-11118181No hitNo description
PfamPF000351.5E-10118181IPR014720Double-stranded RNA-binding domain
SuperFamilySSF474591.57E-12515574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.684515564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-11516573IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.88E-11517569No hitNo description
SMARTSM003533.2E-11521570IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6523565IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MLWCNLVEIS EIKGGLIACI NCLPDHLTHK NRLQEYAQGA GLPLPVYQTV NEGNRHAPST  60
FRSSVLVDGV CYASSNTFAS RKAAEQDAAR LAMISITEKI KEEVPTIPPI HEDLVFCKSI  120
LNEYNMKRKI EPPTYQTFQG NAKVPFFVSS LVVNGVSYTG DVGKSKKEAE QLAARVVIQS  180
LLGDSESAPI MSEILRSKYK LAHKSKEPDS SHASLATSAV NTGQGYVIST GTPVVVASEA  240
SLGMQPVRHE FIKRKQEEPA SQAPPQLPIA FVPPACKQPL VVVSTSLATT PTSLAPASTS  300
LAPASASLAP ALASLAPAST SLAPASTSLG PAPTFWAVLP ASKKRRKNKK PETNLQNDNQ  360
ATSNYQPDHL INFKSGYYNS GESLLSFDKN KQSSQSIYLN SSTSKDDCDS DLYHGSYSQW  420
NQMAGIGDPS LSGNFSCLQT ASNYSSSIPN TSKEDHGDHE AYGWLHSEAS DSFQEPDEQK  480
AGFHKRPITG ESMQPSKKQC TGATKKPKPK SSTSPSKDPQ SIAAKNRRER ISERLKILQE  540
LVPNGCKVDL VTMLEKAISY VKFLQLQVKV LATDEFWPVQ GRKAPDISQV KEAIDAILSS  600
SQRDTSSSSK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2n3f_A3e-14251812148Double-stranded RNA-binding protein 4
2n3g_A3e-14251812148Double-stranded RNA-binding protein 4
2n3h_A3e-14251812148Double-stranded RNA-binding protein 4
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1342346KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr014375.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009371836.10.0PREDICTED: double-stranded RNA-binding protein 6-like
TrEMBLA0A498J4N00.0A0A498J4N0_MALDO; Uncharacterized protein
STRINGXP_009371836.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49373253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.14e-50ROOT HAIR DEFECTIVE6