PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr013953.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | HSF | ||||||||
Protein Properties | Length: 318aa MW: 35505.9 Da PI: 5.8778 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.7 | 1.2e-35 | 46 | 136 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d++++++isw+++g+sfvv++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv ++ weF ++sF++g k+ll++i+ Pbr013953.1 46 FLTKTYQLVDDPSIDDVISWNDDGSSFVVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFLNDSFRRGGKRLLCEIQ 133 9*****************************************************************99.........******************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k Pbr013953.1 134 RRK 136 *98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 1.2E-57 | 42 | 135 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 4.26E-35 | 43 | 135 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.7E-37 | 43 | 135 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 5.5E-32 | 46 | 135 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.0E-21 | 46 | 69 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.0E-21 | 84 | 96 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 85 | 109 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.0E-21 | 97 | 109 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MAPTPLEPTG ESTSGESSQR XXXXXXXXXX XXPSGDLSQR ALPTPFLTKT YQLVDDPSID 60 DVISWNDDGS SFVVWNPTVF ARDLLPKYFK HNNFSSFVRQ LNTYGFRKVV PDRWEFLNDS 120 FRRGGKRLLC EIQRRKINPP APPVASVWAV PTAKPMISPS NSGDEQVMSS SSSPIRASSE 180 IMDENERLRK ENVQLTKELA EVKSLCNNIF TMVSNYACAQ SENGFPELKP LDLMPGKRFS 240 GKRKNEEEEE ASPKLFGVVI GAKRAREAGG DGVENDETDL RLQQPSGSEV KSEPSDIGHK 300 ETPWLKQCHM ANQRVCN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-23 | 46 | 135 | 29 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-23 | 46 | 135 | 29 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-23 | 46 | 135 | 29 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00575 | DAP | Transfer from AT5G62020 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr013953.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018506236.1 | 0.0 | PREDICTED: heat stress transcription factor B-2a | ||||
Swissprot | Q9SCW4 | 4e-93 | HFB2A_ARATH; Heat stress transcription factor B-2a | ||||
TrEMBL | A0A498JN67 | 0.0 | A0A498JN67_MALDO; Uncharacterized protein | ||||
STRING | XP_009371307.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2037 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 4e-92 | heat shock transcription factor B2A |
Publications ? help Back to Top | |||
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