PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pbr013924.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 222aa MW: 24105.9 Da PI: 4.7659 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.4 | 1.7e-18 | 58 | 108 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr++ +g+Wv+e+r+p +k++r++lg+f tae+Aa+a++ a+ +l+g Pbr013924.1 58 PVFRGVRRRN-SGKWVCEVREP---NKKTRIWLGTFPTAEMAARAHDVAAIALRG 108 579****888.8******9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.7E-14 | 58 | 108 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.32E-21 | 59 | 118 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.194 | 59 | 116 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.4E-32 | 59 | 118 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.1E-31 | 59 | 122 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.2E-9 | 60 | 71 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.17E-31 | 60 | 118 | No hit | No description |
PRINTS | PR00367 | 7.2E-9 | 82 | 98 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 222 aa Download sequence Send to blast |
MDGCSNYYVD PPGESSSASE TSSARPMFMT LSDEEVLLAS TCPKKRAGRK KFRETRHPVF 60 RGVRRRNSGK WVCEVREPNK KTRIWLGTFP TAEMAARAHD VAAIALRGRS ACVNFADSAR 120 RLPVPASSNA KDIQTAATEA AEAFRPTQES DEVCGASVAA PTESTSASEQ QQVFYMDEEA 180 VFGMPGLLAD MAEGMLLPPP HYSEDDDVDI CADVALWSFS D* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-14 | 57 | 115 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00557 | DAP | Transfer from AT5G51990 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Pbr013924.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HQ622623 | 0.0 | HQ622623.1 Pyrus pyrifolia DREB protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009371278.1 | 1e-164 | PREDICTED: dehydration-responsive element-binding protein 1D-like | ||||
Swissprot | Q9FJ93 | 9e-78 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | F6KUC4 | 1e-162 | F6KUC4_PYRPY; DREB protein | ||||
STRING | XP_009371278.1 | 1e-163 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G51990.1 | 2e-79 | C-repeat-binding factor 4 |
Publications ? help Back to Top | |||
---|---|---|---|
|