PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr013792.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 565aa    MW: 61234.6 Da    PI: 7.4331
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr013792.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.5e-09341388455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Pbr013792.1 341 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 388
                  8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.14E-16335406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.56E-10335392No hitNo description
PROSITE profilePS5088815.663337387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16337405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-6341388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-9343393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MEKGSLAKPT WNPSGFSMEM QSNELNCAPQ QLPNSLFNAN WDNSLDQTDP FESALSSIVS  60
SPIAAAGNGG EGGDMIRELI GRLGSISNSG EISPHSYISS NYNNSSTNTS CYSTPLNSSQ  120
RGSLPIENLA QFQADPGFVE RAARFSCFGG GGGGNFGGQF NLNEAELAYR SMARIDSGKL  180
SRVSSNQSLK VAAGSQLAAQ ETNKSSPLDG NSAPDKKFIS RFSRASTPEN GELGDSREGS  240
SVSQQIPGGD LSVKAEIVTN SRKRKSAARG KAKASSSSPS VKDAKDVAEK EEPNAKKSKN  300
DEASGKEKET SKAKTKANSE TPEAPKDYIH VRARRGQATD SHSLAERVRR EKISERMKFL  360
QDLVPGCNKV TGKAVMLDEI INYVQSLQCQ VEFLSMKLST VNPRMDLNME ALLSKDIIQS  420
RGSLQNALYQ LDSSVPSFPF GYQPQQLPPL HSSSISSATD TQFPANPLNS ALRQSHGMQL  480
PAFDRFGEAA SQMPTLFEDD LQSVVQMGFG QIQQXXXXXX XXXXXXXXXX XXXXXXQESF  540
HGNKVNFYKI TCNRQIVGIE CFNV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260265SRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr013792.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009371096.10.0PREDICTED: transcription factor bHLH62 isoform X1
TrEMBLA0A498JZS90.0A0A498JZS9_MALDO; Uncharacterized protein
STRINGXP_009371096.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.18e-68bHLH family protein