PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr013713.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | MYB | ||||||||
Protein Properties | Length: 374aa MW: 42121.3 Da PI: 9.7515 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.8 | 7.7e-16 | 4 | 53 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd ll +vkq+G++ W++++++mg + R +k+c +rw +yl Pbr013713.1 4 RQRWQPEEDALLRAYVKQYGPKEWSLVSQRMGkpLLRDPKSCLERWKNYL 53 89**********************************************97 PP | |||||||
2 | Myb_DNA-binding | 36.9 | 8.2e-12 | 59 | 103 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T+eE+ l v + +++G++ Wk+Ia++++ gRt+k + +w + Pbr013713.1 59 KGSLTPEEQALVVSLQAKHGNK-WKKIAAELP-GRTPKRLGKWWEVF 103 6788******************.*********.*****999999766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.221 | 1 | 57 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-13 | 3 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-13 | 4 | 53 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.68E-21 | 4 | 99 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.35E-9 | 6 | 53 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-20 | 6 | 60 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.51 | 58 | 108 | IPR017930 | Myb domain |
SMART | SM00717 | 4.5E-10 | 58 | 106 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-10 | 59 | 100 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-16 | 61 | 107 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.64E-7 | 63 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MKERQRWQPE EDALLRAYVK QYGPKEWSLV SQRMGKPLLR DPKSCLERWK NYLKPGLKKG 60 SLTPEEQALV VSLQAKHGNK WKKIAAELPG RTPKRLGKWW EVFKEKQLKL QSQRQKNKHL 120 LCNTSSSSTQ LPPDMNIAVA GIGSPEKAVK GPYDHILETF AEKYVVQPKV YGAAFQSTTM 180 MQEPDPVLSL GSVSSTATSV TAPSVMPQWM NINPSSTTSS TSSTTPSPSV SLTLSPSDPV 240 PDTDPTRFYQ MGTLIQLCKE VEEGMQSWMQ QKKEATWRLS RLEQQLEAEK GRKQREAVEE 300 IEAQIRCLRQ EEVALVGRIE RDYREELSAL QREAEGKEAK FVEAWCGKHA KLAKLVELIA 360 VGVRNHGFSS KPC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 9e-15 | 7 | 100 | 7 | 97 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 2e-14 | 7 | 100 | 30 | 120 | MYB TRANSFORMING PROTEIN |
1mse_C | 9e-15 | 7 | 100 | 7 | 97 | C-Myb DNA-Binding Domain |
1msf_C | 9e-15 | 7 | 100 | 7 | 97 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr013713.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ074474 | 0.0 | DQ074474.1 Malus x domestica MYB92 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009371007.1 | 0.0 | PREDICTED: protein rough sheath 2 homolog | ||||
TrEMBL | Q2LMD8 | 0.0 | Q2LMD8_MALDO; MYB92 | ||||
STRING | XP_009371007.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2597 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37630.1 | 1e-59 | MYB family protein |