PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr013631.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 359aa    MW: 40168.4 Da    PI: 4.4326
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr013631.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.3e-20121171155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  ++y+GVr+++ +g+W+AeIrdp     r +r +lg+f+taeeAa  +++a+ kl+g
  Pbr013631.1 121 KKYRGVRQRP-WGKWAAEIRDPA----RrQRLWLGTFDTAEEAAMVYDNAAIKLRG 171
                  59********.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.89E-34121178No hitNo description
Gene3DG3DSA:3.30.730.106.9E-31122179IPR001471AP2/ERF domain
PfamPF008471.8E-13122171IPR001471AP2/ERF domain
SMARTSM003801.9E-39122185IPR001471AP2/ERF domain
PROSITE profilePS5103224.131122179IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-22122179IPR016177DNA-binding domain
PRINTSPR003676.2E-11123134IPR001471AP2/ERF domain
PRINTSPR003676.2E-11145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEFLDAESSI LCPIKYTEHR SRTKKLTKPR KKSTSEFNSS VVPRVVRISV TDPDATDSSS  60
DEGEEFFGRQ RVKHYINEVS IETDFRNSLV IKNNARKRPA AEVPANRRPL KNAVSPTNGG  120
KKYRGVRQRP WGKWAAEIRD PARRQRLWLG TFDTAEEAAM VYDNAAIKLR GPDALTNFVA  180
PPPKEEEKPE PLVTEPVEVE ANGTTSVSGY DSGSESHNLA SPTSVLHFRS QPSIEEVDEA  240
QRFQMFDRVD EYEDETGTNI LSDDLSDFGN YLPLDLPYFD DAFSFSASES PLLDSPLFFD  300
DGSAAVPDTL PDCFMKDDFS ELFRDTFDAS LSHTTSSMCQ GDDYFQDILF GSDPLVVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-22120178362ATERF1
3gcc_A3e-22120178362ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11931RSRTKKLTKPRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr013631.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324370.0GU732437.1 Malus x domestica AP2 domain class transcription factor (AP2D13) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009352064.10.0PREDICTED: ethylene-responsive transcription factor CRF4-like
TrEMBLA0A498KTK70.0A0A498KTK7_MALDO; Uncharacterized protein
STRINGXP_009352064.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-51cytokinin response factor 4