PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr013603.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | Nin-like | ||||||||
Protein Properties | Length: 253aa MW: 28848.9 Da PI: 4.9239 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 81.5 | 8.4e-26 | 142 | 190 | 4 | 52 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++l++++kyF+ pi++AAkeL+v+lTvLKr+CR+++I+RWPhRk++sl Pbr013603.1 142 PLELDEIQKYFDVPITQAAKELKVGLTVLKRRCRELNIMRWPHRKLRSL 190 6899*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.052 | 125 | 211 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.5E-23 | 143 | 190 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MADSIFSQYL VPKIETDPHE FNSSIPYYQD PCQDQSQFTS PPLPLQYNPN QLPQMGSQDF 60 EDLGIWDYIL DDAALPSPFD YEVVDENPLT TMAESIVCSN SVSGDSGDVF RMLDWGMESW 120 GKYDGEGMTK NGSCSKRMSA APLELDEIQK YFDVPITQAA KELKVGLTVL KRRCRELNIM 180 RWPHRKLRSL NALIENVKGM GLTNELRMLE EHKRLLEQLP DMELPERAKR LRQACFKANY 240 KKKRTLCLTA GP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr013603.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009352035.1 | 0.0 | PREDICTED: protein RKD4-like | ||||
TrEMBL | A0A498KKN5 | 1e-168 | A0A498KKN5_MALDO; Uncharacterized protein | ||||
STRING | XP_009352035.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6898 | 32 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 3e-44 | RWP-RK domain-containing protein |